Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1543 ATGACCAGCGTAACGGACGCTGATCGAGACAAGTACAACATGATAAACTTCGAAGAGACCGAGTTACGACTCGGTCTCCCTGGTGCAAGTGATCATGGAGATTTACCGGTAAAAAATAGTTGTGGAAAAAGAGGTTTCTCAGAAACCGGTAATATGGATTTGAAGCTTAATCTTTCTTCAACTAATAATGACTCAGCTTCATCTTCTTCTACTATAGCTGTAAACAAAGGCATAGAGAAAACTTCTACTGCTTCTATTGCTACTGCACCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCATTTAGAAAGAACATAGTAAATGTTCAAAAGAGCAACAATGAATCAGAAGCAGAAAAAAGCACAAGCGGTGGAAATGGAGCATTTGTGAAGGTGAGTATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCATTCACAATTGACAATTGTGGGTCCCAAGTTACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGGGATTGGATGCTTGTTGGCGATGTTCCTTGGGAAATGTTCGTTCAATCATGCAAGCGTCTCCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCGCCAAGGGCAGTGGAAAAATGCAAGAACAGAAGCTGA 750 0.416 MTSVTDADRDKYNMINFEETELRLGLPGASDHGDLPVKNSCGKRGFSETGNMDLKLNLSSTNNDSASSSSTIAVNKGIEKTSTASIATAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEAEKSTSGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1543 249 ProSiteProfiles PB1 domain profile. 131 231 IPR000270 GO:0005515
Tpr1g1543 249 Pfam AUX/IAA family 19 240 IPR033389 -
Tpr1g1543 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 242 IPR003311 GO:0005634|GO:0006355
Tpr1g1543 249 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 242 - -
Tpr1g1543 249 Gene3D - 126 243 - -
Tpr1g1543 249 SUPERFAMILY CAD & PB1 domains 125 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1543 Tpr-Chr1 14299443 14303160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1543 121 239 B3 DNA Binding Superfamily AT4G23980 31.092 9.79e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g1543 AUX_IAA 6.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1543 K14484 - pop:7474609 333.569