Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1542 ATGGCGTCGGAAGGATTAGGTGATGATTTCTTCGAGCAGATCTTAGCAGTACCTGAAAATGGAGTTGGATATGGAAGAAATATGGATCATATTAGAGGAGTGTTACAATTGGGATCAACTACGACTACACCTTCTGCTGGTGCTGCTGGAATAATGCCGTTGGGGTTAAATTTGGAACAAAATCATCATGGATTTCTCCGACACCAACAAGATGCAACACGGTTTGTTGATAACGTTGTTGAGAGTAACATTACCAACAACAACAACAATCATCATCAACATCAACATCTTCGTCTTCATGATATCAATAACACTTCATCTTCACCCTCTTCTACTCCGGGAATCACTGATAGAGATTCAATGCACATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGTCCCATGCTCCCATCTCCACCTCCTCAACCCCAACTCCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCAGCCAAATCCAGCGTCTGTTACAGCCATGCCACAAGCCCCTGGCATCCGCCCTCGAGTACGAGCAAGAAGAGGCCAAGCTACAGACCCCCACAGCATTGCTGAGAGGTTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGTATCAACAAGACGGACAAAGCAGCAATGCTTGATGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGAGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACTTAGAAGGTGGAGCTAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAAGCACTTTGTATCATGCCAATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCACTCATAG 1056 0.4508 MASEGLGDDFFEQILAVPENGVGYGRNMDHIRGVLQLGSTTTTPSAGAAGIMPLGLNLEQNHHGFLRHQQDATRFVDNVVESNITNNNNNHHQHQHLRLHDINNTSSSPSSTPGITDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQHQQHFQSQQPNPASVTAMPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDLEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1542 351 Gene3D - 189 251 IPR036638 GO:0046983
Tpr1g1542 351 SMART finulus 200 249 IPR011598 GO:0046983
Tpr1g1542 351 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 5 337 - -
Tpr1g1542 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 253 IPR036638 GO:0046983
Tpr1g1542 351 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 337 - -
Tpr1g1542 351 Pfam Helix-loop-helix DNA-binding domain 199 243 IPR011598 GO:0046983
Tpr1g1542 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1542 Tpr-Chr1 14261299 14268084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1542 168 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 74.863 5.34e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g1542 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1542 - - vun:114189791 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2071 1 21536832 21540938 Tpr1g1542 1 14261299 14268084 ECH
Tpr1g1542 1 14261299 14268084 Tpr1g1542 1 14261299 14268084 ECH