Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1535 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTTGTGAGACATAAACATGAGAAGAAAAAATATGTGCTTAAGAAGATTAGACTTGCCCGCCAAACTGAGCGGTCTCGCAGATCTGCACACCAGGAGATGGAGCTTATATCTAAATTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAACGGTGTTCTGTTTCCGGAGGAGAAACTTTGCAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATACGAAATGGCAGGACAAAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATCAAGATTAGTAAGTCCATAGTGGCTCCACTACCAACCAAATATTCTAGTTCATTTCGAAGTCTGGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCTGAGCTTCTTGCGCACCCGCATCTTCAATCATATGTTCTAAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAGTACATTGCCTGTTCATTGGCGAGAGTCAAAATACACTAAGAAAACTAGATTTTTAGTTCCAAAAGATGACACTGTCGGTAGGGATAAGCGCTATTCTTACAGTAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGGTTGTACATCTGATCATTTGAGTCAAAGGTTAGCAGAATTATGTACAGGAGATAGCCGTGACATGAAGTCAGTCCATAAACCTGTTGTTTCCAGAACTTCTAGTATTGCTAAGGCTCCAAAGCTCACTTCATCAAAAGTTGTTTCTGCCACCAACAGGAAATCAATGGAACCTTCGAAGAATCATAAGGTGGTAAAGCAAGCTCTCCCTGTTTCACATAGCATCACAAATTCTTCTCATACAAATCGCAGAGCATCATTTCCTTTGCCAACAAGGGGAGGTATTCAGCAGCTTCCTTGCAGGCCCAGTGATGGTTTGCTTAGCCATGTGTCTTCACCAGATATCTCAGTTAACTCTCCCCGTATTGATAGGATAGCTGAATTCCCATTAGCATCATATGAAGATTGTTTGTTCCCTATCACTAAAACGTCAACTGCCGCACAAGGTTCCTTAGGATTCCCATCTCGTGACAATTACTCAACTATGATAGACAAATGTACAATAGAGGTCAATGATAGAGCCTCTATTAAGCCTAGTAGTACCGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTCACGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACGGCAGGTGCATCAAGCTACACATCTTCAGACTTGCAACGCCGGCAGTTTGACACTTCATCTTTTCAGCAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAGTTTAGTGCAAGATTGCTCCAGCAAGCTAGGTATGATGAACTTGGAGTTTTGTTGAAACCATTTGGTCCGGAGAAAGTTTCGCCAAGAGAAACTGCTATCTGGTTGAGCAAGAGCTTCAAAGGGAACACTAACAACACCGAAGAGTCCCAGTAA 1872 0.4209 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGQKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLAHPHLQSYVLKIHLKLNSPRRSTLPVHWRESKYTKKTRFLVPKDDTVGRDKRYSYSNDRTLNPSVSGADQDSVCSTLEIGCTSDHLSQRLAELCTGDSRDMKSVHKPVVSRTSSIAKAPKLTSSKVVSATNRKSMEPSKNHKVVKQALPVSHSITNSSHTNRRASFPLPTRGGIQQLPCRPSDGLLSHVSSPDISVNSPRIDRIAEFPLASYEDCLFPITKTSTAAQGSLGFPSRDNYSTMIDKCTIEVNDRASIKPSSTDDWQGIKRSMLKEIHEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKGNTNNTEESQ* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1535 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tpr1g1535 623 MobiDBLite consensus disorder prediction 534 551 - -
Tpr1g1535 623 CDD STKc_Nek 3 258 - -
Tpr1g1535 623 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Tpr1g1535 623 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1535 623 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1535 623 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tpr1g1535 623 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1535 623 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tpr1g1535 623 MobiDBLite consensus disorder prediction 528 551 - -
Tpr1g1535 623 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Tpr1g1535 623 MobiDBLite consensus disorder prediction 374 393 - -
Tpr1g1535 623 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 608 - -
Tpr1g1535 623 PANTHER SERINE/THREONINE-KINASE NEK4 1 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1535 Tpr-Chr1 14137528 14144252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1535 10 260 MAP Kinase Kinase Kinase AT1G53570 32.812 4.92e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr1g1535 Pkinase 8.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1535 K08857 - gmx:100804898 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1535 1 14137528 14144252 Tpr1g1535 1 14137528 14144252 ECH