Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1534 ATGTTTGATGGAGTTCCAGACCAATTCCACCAATTCATAACTCCAAGAACATCTTCATCATCATTACCACTTCATTTACCTTTCCCTCTTTCAACACCAAATAATAACACTTTTCCTACTTTTGATCCTTATAATCAACAATTACCACTCCAAGTTCAACCTAATAATCTTTTGCACCCATTACACCATCATAAAAATGATGAACACAAGCAACAAAACAATACTACTTCTACTCCTTCAATGAATAACTTCCAAATTGATGAAAGAGATCAAAGACAAATACTACCTCAACTTATTGATCCTTGGACTAATGATGAAGTTCTTGCTCTTTTGAAGATCAGATCCAGCATGGAAAATTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGAAGCTAGAAGAAGTTGGTTATAAACGTAGTGCAGAAAAATGTAAGGAGAAATTTGAAGAAGAAAGTAGATTCTTCAACAACATTAATAATAATCAGAATCAGAATCAAAATCAAAATCCGAATAATTTCGGTAAGAATTTCCGGTTTGTTACGGAGCTTGAAGAGCTTTATCAAGGTGGTGGTGAGAATAATAGTAATCAAGTTGGGACTCAGAAGCCAAACAACGTACAAGACAAAATGGATCGTGGTGAGGATTCAAGAAACGACGATGTTTTAGTGACGAAGAAAAGCGAAGATGAGGTGTTTGATAAAAGTACTACAAATGAAGAGAGGAAGAGGAAGAGAGGTGATAATAGATTTGAAGTGTTTAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAGGAAATGCATAATAAGCTTATTGAAGATATGATTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAGATGAACAAAGAGCTTGAATTGATGGCACAAGAACAAGCTATTGCTGGTGATAGACAAGCCAATATAATTCAATTCTTGAACAAATTCACAACAAGTACTAATTCTTCTACTTCTCTAGCTTTAATTGCATCTTCAATTCAAACCTTTGGAATTGGAAAACAAGACAAATCTAAGGTAACATCTAATTCTTCTACATTGCACTCACAAAACCCTAATCTTGAAAATCATGACAAAACTCTTCAACCAAACCCTGAAAACCCTAACTCAGGCAATCCTTCTTCTACTACTATTATTACTACTACTACTACTACTACTGCTTTGGCGATTACGCCACACAAGAACAACGCTATTTCTTCGTATAGCGGTGAGAAAGAGGATATAGGGAGAAGATGGCCAAAAGATGAAGTATTGGCATTGATAAACTTGAGGTGCAATACCAACAATGAAGAAAAGGAAGGAAACAACATCAACAACAAAGCACCACTTTGGGAGAGAATATCACAAGGAATGTTGGAATTAGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAATGGGAAAATATAAACAAGTACTTTAGAAAAACAAAAGATGCTAATAGGAAAAGATCACTTGATTCAAGAACTTGTCCTTATTTTCATCTATTGAGTAATCTTTATAACCAAGGTAAACTTGTTCTTCAATCTGATCAAAAGCAAGAAACCAATAATAATAACATGAATGTGGCAGAAGAAAATGTTCAAGAACAAACTCCTCCACAAGATGAAAAACAAGGTGGTGAGTGTTCTCAAGTGGGGCCTGCATTTGCTGGTGATTTTACTATGTAA 1731 0.3512 MFDGVPDQFHQFITPRTSSSSLPLHLPFPLSTPNNNTFPTFDPYNQQLPLQVQPNNLLHPLHHHKNDEHKQQNNTTSTPSMNNFQIDERDQRQILPQLIDPWTNDEVLALLKIRSSMENWFPDFTWEHVSRKLEEVGYKRSAEKCKEKFEEESRFFNNINNNQNQNQNQNPNNFGKNFRFVTELEELYQGGGENNSNQVGTQKPNNVQDKMDRGEDSRNDDVLVTKKSEDEVFDKSTTNEERKRKRGDNRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEAWKKQEMEKMNKELELMAQEQAIAGDRQANIIQFLNKFTTSTNSSTSLALIASSIQTFGIGKQDKSKVTSNSSTLHSQNPNLENHDKTLQPNPENPNSGNPSSTTIITTTTTTTALAITPHKNNAISSYSGEKEDIGRRWPKDEVLALINLRCNTNNEEKEGNNINNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQKQETNNNNMNVAEENVQEQTPPQDEKQGGECSQVGPAFAGDFTM* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1534 576 MobiDBLite consensus disorder prediction 191 245 - -
Tpr1g1534 576 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Tpr1g1534 576 PANTHER - 16 567 - -
Tpr1g1534 576 MobiDBLite consensus disorder prediction 208 245 - -
Tpr1g1534 576 MobiDBLite consensus disorder prediction 353 376 - -
Tpr1g1534 576 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 16 567 - -
Tpr1g1534 576 MobiDBLite consensus disorder prediction 191 207 - -
Tpr1g1534 576 ProSiteProfiles Myb-like domain profile. 431 491 IPR001005 -
Tpr1g1534 576 Gene3D - 102 157 - -
Tpr1g1534 576 Gene3D - 432 496 - -
Tpr1g1534 576 MobiDBLite consensus disorder prediction 546 576 - -
Tpr1g1534 576 CDD GT1 430 498 - -
Tpr1g1534 576 Coils Coil 296 316 - -
Tpr1g1534 576 Pfam Myb/SANT-like DNA-binding domain 100 170 IPR044822 -
Tpr1g1534 576 Pfam Myb/SANT-like DNA-binding domain 430 518 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1534 Tpr-Chr1 14117417 14120135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1534 1 523 Trihelix Transcription Factor Family AT5G28300 41.472 1.02e-102 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g1534 Myb_DNA-bind_4 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1534 - - gmx:100804367 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1534 1 14117417 14120135 Tpr1g1534 1 14117417 14120135 ECH
Tpr6g0186 6 1552046 1554492 Tpr1g1534 1 14117417 14120135 PCT