Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1505 ATGGGTTGTGTAATTAGCCGAGAAGCGGAATCGGGTATTGTGTCGGAGGCGAAGGAGGACAGAAATTTGAGAGTTGAGTCAAGTAGGAAGGTTGAAGAAGTGTCGACGAGTAGAGTTGAGGAGAGTGTGGTAGAGGTTCAGAATGGTGAGAAAGTGAATGTTAAGGAGAAGGAAGAGAAGAGTGACGGTGATGGGGTTCAGCGGCCGAAGGGTGAAAGAAGAAGATCGAAGCCAAATCCGAGGTTAAGTAATCCGTCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAGCGGTTTGTGGGGAAGCTCTTAATGGGTGGACTCCGCGAAAGGCTGATACATTCGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGATTTATTAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAACCCGAGAGTGTGAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATGAAGTTAGAAGGTTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTTTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATACTCGACATGTACTTCACCGAGATATTAAAGGATCAAATCTTCTGATTGACAACGAAGGAGTACTCAAAATTGCCGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGACATCCTATTCCTATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACGGATTATGGTGTGGGTGTGGACCTTTGGAGTGCCGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACTGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCTAATGCTACCTTGTTCAAACCTAGAGAGCCATATAAAAGATGCATAAGAGACGTATTTAAAGAATTTCCACCTTCTGCTCTGCCCCTTATTGATACTCTTCTTGCAATTGATCCAGTAGAGCGGAAGAGTGCTACAGATGCTCTAAGAAGTGAGTTCTTTAACACGGAACCTTATGCTTGCGATCCTTCTAGTCTTCCGGAGTATCCCCCAACCAAGGAAATGGACGTTAAACGGCGCGATGATGAAGCAAGAAGATCAAGAGCTGCAGCCAAAGCTCGAGTTGATGGGGGAAAGAAGCATCGAACACGTGATCGTGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATCGATAGAAGGCGTCTAATCACTCATGCGAATGCTAAAAGCAAGAGTGAAAAGTTTCCTCCGCCACATGAAGACGGACAACTTGGATTTCCTTTGGGAGCTTCAAACCATATTGATCCAGATATAGTTCCTCACGACGTCCCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTCCAAGCTTGGTCGGGTCCCATAGGTAATAATCCTACTAGCAACGGTTTCACAAAGCGGAAGAAAAACACCGCAAATGATGCATTGGATTTATCAAAACCATATAAAGGAACTCACAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA 1761 0.4361 MGCVISREAESGIVSEAKEDRNLRVESSRKVEEVSTSRVEESVVEVQNGEKVNVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPSKHLQGEQVAAGWPSWLTAVCGEALNGWTPRKADTFEKIDKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHTRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPIPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRDVFKEFPPSALPLIDTLLAIDPVERKSATDALRSEFFNTEPYACDPSSLPEYPPTKEMDVKRRDDEARRSRAAAKARVDGGKKHRTRDRAVKAAPAPEANAELQYNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVPLDSMSYTFSKEPFQAWSGPIGNNPTSNGFTKRKKNTANDALDLSKPYKGTHKDKGKGKKIIA* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1505 586 MobiDBLite consensus disorder prediction 20 91 - -
Tpr1g1505 586 ProSiteProfiles Protein kinase domain profile. 121 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1505 586 Pfam Protein kinase domain 121 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1505 586 PANTHER CELL DIVISION PROTEIN KINASE 46 559 - -
Tpr1g1505 586 CDD STKc_CDK9_like 121 407 - -
Tpr1g1505 586 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Tpr1g1505 586 MobiDBLite consensus disorder prediction 541 586 - -
Tpr1g1505 586 SMART serkin_6 121 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1505 586 MobiDBLite consensus disorder prediction 20 39 - -
Tpr1g1505 586 MobiDBLite consensus disorder prediction 559 574 - -
Tpr1g1505 586 SUPERFAMILY Protein kinase-like (PK-like) 115 413 IPR011009 -
Tpr1g1505 586 PANTHER OS01G0367700 PROTEIN 46 559 - -
Tpr1g1505 586 MobiDBLite consensus disorder prediction 541 558 - -
Tpr1g1505 586 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Tpr1g1505 586 Gene3D Transferase(Phosphotransferase) domain 1 204 447 - -
Tpr1g1505 586 MobiDBLite consensus disorder prediction 50 79 - -
Tpr1g1505 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Tpr1g1505 586 MobiDBLite consensus disorder prediction 427 467 - -
Tpr1g1505 586 MobiDBLite consensus disorder prediction 427 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1505 Tpr-Chr1 13849238 13855354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1505 113 445 Core Cell Cycle Gene Families AT5G10270 52.436 1.26e-120 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr1g1505 Pkinase 2.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1505 K08819 - gmx:100817289 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1505 1 13849238 13855354 Tpr6g0212 6 1731606 1736406 ECH
Tpr1g1505 1 13849238 13855354 Tpr1g1505 1 13849238 13855354 ECH
Tpr6g0212 6 1731606 1736406 Tpr1g1505 1 13849238 13855354 PCT