Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1504 ATGGCTATTGAAGTGGCATCATCTGTTGTCTCGAAGTTACAAATGCTATCCACGTCCGATCATGCCTCCGTTGTTTCCATGAACTTATTTGTTGCACTTCTATGTGCTTGTATTGTCCTTGGCCATCTTCTCGAGGAGAATCGGTGGATGAATGAGTCCATCACTGCCCTTTTGATCGGTATTGCCACTGGTGTAGTCATTTTGCTGTTAAGTGGTGGAAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCGCCTATTATATTCAATGCCGGGTTTCAGGTGAAAAAGAAGCAATTTTTCGTCAACTTCATGACTATCACGTCGTTTGGTGCTATTGGCACATTAATATCCTGCGTCATCATAACTTTCGGTGCTACCCAAGCTTTTAAGATGATGGATATTGGGCCGCTGGATATCGGCGATTACCTAGCTATTGGAGCAATATTTGCCGCGACAGATTCTGTTTGCACATTACAGGTGCTAAATCAGGATGAGACACCTTTGTTATATAGTCTTGTATTTGGGGAAGGTGTTGTGAACGATGCTACCTCGGTGGTGCTTTTCAATGCAATTCAAAGCTTTGATCTCGACCGACTTAATCCTTCAATTGCAGTGCACTTTTTGGGCAACTTCTTGTATTTGTTTATAGCAAGCACGCTCCTTGGTGTTTTGACAGGTCTGCTTAGTGCTTACGTTATCAAAAAGCTGTACATTGGCAGGCACTCTACAGATCGTGAAGTTGCTCTTATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGTTATTCTATTTAAGTGGCATTCTCACGGTATTCTTTTGCGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACCGAGAGTTCAAGAGTCACTACCAAGCATTCTTTTGCTACCTTGTCGTTTGTTGCTGAGATATTTATCTTCCTTTATGTTGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGTCCTGGAACATCTATAGCAACAAGTGCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTCCCCTTATCCTTTTTATCCAACTTGACTAAAAAACAACAACATCAGAAGTTATCCTTCAGACAGCAAGTGATCATTTGGTGGGCTGGTCTTATGAGAGGCGCTGTTTCAATGGCCCTCGCGTATAATCAGTTCACTAGGTCGGGGCACACTCAATTGCGTAGCAATGCAATCATGATCACCAGCACCATCACCGTTGTCCTTTTCAGCACAGTGGTGTTTGGTTTGCTGACTAAGCCACTTATAAGGCTTCTACTACCTCATCATCATCAGAAACCCACAAACAGCATGACAACCACAGAATCATCTACTCCAAAATCGGTCATTGTCCCACTTCTAGGAGAGGCTCGAGATTCTGAAGCTGATCTTGAAGGCCATGAAATACACCGTCCAAACAGCATCCGTGCCTTACTTTCCACTCCAACTCACACAGTTCATCGACTATGGAGAAAGTTTGACGATTCATTCATGCGTCCTGTATTTGGTGGCAGGGGTTTTGTTCCTGTAGAACCTGGCTCACCAACTGAACGCAATGGTACTGTATGGCGTTGA 1635 0.4281 MAIEVASSVVSKLQMLSTSDHASVVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGIATGVVILLLSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITSFGAIGTLISCVIITFGATQAFKMMDIGPLDIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLDRLNPSIAVHFLGNFLYLFIASTLLGVLTGLLSAYVIKKLYIGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIATSAVLLGLILLGRAAFVFPLSFLSNLTKKQQHQKLSFRQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHHHQKPTNSMTTTESSTPKSVIVPLLGEARDSEADLEGHEIHRPNSIRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPTERNGTVWR* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1504 544 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 26 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr1g1504 544 PANTHER SODIUM/HYDROGEN EXCHANGER 2 8 541 - -
Tpr1g1504 544 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr1g1504 544 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr1g1504 544 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr1g1504 544 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tpr1g1504 544 Pfam Sodium/hydrogen exchanger family 30 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tpr1g1504 544 Gene3D - 147 198 - -
Tpr1g1504 544 PANTHER SODIUM/HYDROGEN EXCHANGER 8 541 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1504 Tpr-Chr1 13837219 13843316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1504 7 539 Antiporters AT3G05030 78.585 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1504 - - gmx:732573 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0215 6 1760628 1765717 Tpr1g1504 1 13837219 13843316 PCT