Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1482 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGATATGGCACTTGAAGCAGTGGTTTATCCACAAACACAAGACCCTTTTGGTTTTGGAATCAACAAAGATTTTTACAACTTCAACAACCTTGTTGCAAAAGAACAAGAACATCAACATGAACATCAACAAGAACAAGAACAAAGATCTTTCTGTTTTGTAGAAAACCAAACAGAGAAAAACAATTATCCTTATTATGGAGATTGGAATAACAATACTTTTTCACCACCCCATTTCAATGAACTTCAAGAAACTACTACTGATCCAAGTAGTAACAACACTCAAAACTTCGATACCTCGCCTTCCATTAACACATTTGTTCGTCCAAAAAGGCGCAGAGCAAGAAGCCGAAAAAACAAAGAAGAAATTGAGAGTCAGAGAATGACTCACATTACTGTTGAGCGCAATAGGAGAAAACAGATGAATGAGTATCTTGCTGTTCTTCGTTCTCTCATGCCAGAATCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAAGAGCTTGAACACAAGTCTCATTTGCTTGGTGCTAAGAAAGAAGAAGAGGTGAAATCTGATGATGTTGGTGGATCAAACAAACCATTTTCTGAGTTCTTTACATTTCCACAGTATTCAACAAGTAATAGTGGTGTGTGTGGTAGTAGTTCTAATTCTGCAGCAACTATTGGTGAAAAAGTTGGTGAGATTCAATCTTGCATTGCTGACATAGAAGTGACAATGGTTGAAAGCCATGCAAATATCAAAATAAGATCAAAAAAGAGACCAAAACAGCTCTTGAAAATTGTATCTAGTTTGCATAACATGCATCTCACAATCTTGCATCTAAATGTTACCACTACTGGTGAAATTGTTCTCTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAATTTGGGATCAGTGGATGATATAGCTGCAGCTATATATCAAATGGTGAATAGGATTCAACAAGAACAATGTTGA 1020 0.3627 MCLPEEERDRVKDMALEAVVYPQTQDPFGFGINKDFYNFNNLVAKEQEHQHEHQQEQEQRSFCFVENQTEKNNYPYYGDWNNNTFSPPHFNELQETTTDPSSNNTQNFDTSPSINTFVRPKRRRARSRKNKEEIESQRMTHITVERNRRKQMNEYLAVLRSLMPESYIQRGDQASIIGGAINFVKELEHKSHLLGAKKEEEVKSDDVGGSNKPFSEFFTFPQYSTSNSGVCGSSSNSAATIGEKVGEIQSCIADIEVTMVESHANIKIRSKKRPKQLLKIVSSLHNMHLTILHLNVTTTGEIVLYSLSVKVEDDCNLGSVDDIAAAIYQMVNRIQQEQC* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1482 339 ProSiteProfiles ACT domain profile. 265 339 IPR002912 -
Tpr1g1482 339 PANTHER MAX DIMERIZATION, MAD 14 338 - -
Tpr1g1482 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 200 IPR036638 GO:0046983
Tpr1g1482 339 MobiDBLite consensus disorder prediction 94 135 - -
Tpr1g1482 339 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Tpr1g1482 339 Gene3D - 126 207 IPR036638 GO:0046983
Tpr1g1482 339 MobiDBLite consensus disorder prediction 94 117 - -
Tpr1g1482 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Tpr1g1482 339 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 338 - -
Tpr1g1482 339 SMART finulus 142 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1482 Tpr-Chr1 13601378 13603296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1482 14 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.372 8.37e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g1482 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1482 - - pvu:PHAVU_007G181900g 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0243 6 1999821 2001799 Tpr1g1482 1 13601378 13603296 PCT