Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1481 ATGGAAAATAATTATCAAAAAAATGACAGAACTACCCCTCTCTGTTTTCTCTTCATCTTCATTCTATTCTCCGGCGTACCCTTCGCCGGAGCACAATCCAACGACAACACAAATGACAACTACTACAACCGTGTGAGTCCTTCCATGGCTATAATAATAGTGATTCTCATCGCTGCTCTTTTCCTCATGGGATTTTTCTCACTCTACATCCGTCGATGTGCCGATTCACCTTCCGGCAGTATCCGAAACATGGCAGGTATTGCTGGACGGTCACGACGCGCGGCGCGTGGTTTAGATGCTTCGATACTTGAGACGTTTCCTATCTTTGAATATTCGGTGGTGAAGATTCATAAAATTGGAAAAGGTGCGTTGGAATGTGCTGTTTGTTTGAATGAGTTTGAAGAAACTGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTGTTTCATCCAGAGTGTATTGATGAGTGGCTTGGTAATCACACTACTTGTCCGGTTTGCAGAGCTAATTTAGTTCCGCAACCGGGTGAATCGGTTCACGGAGTTCCGGTTTTTAATACTGAACCGGAAGACCTCGAGGCGCAAAATGACGTTGTTGAATCAATTCCTGAACATCAGAATGAAGGTTCGGTTAAAGAGTCAACCCAACCACAACCACAACCACAAGTGTTGAGTTTAAGCAACACGCTGAACCGGAACCGGACGAGAGGTTCGCAGTCTGGTCGGCCCCGTTGGTTTTCGCGGTCTCACTCGACCGGTCATTCGGTGGTTCAACCGGGTGAGAATACTGAACGGTTTACTTTGAGGTTGCCAGTGGAAGTGAGGAAACAAATATTACAAAACCCGGAATTGCACCGGGCTAGAAGCTTGGTTGTGTTGCCAAGAGAAACTAGTTCACGACGGGGTTATCGAACAGGTGGCGGGGAGGGAAGTAGTAGAGGGAAGTCTGTAAGGAGGTTGGACCGGGGTTTACTATCGGACCGATGGGTTTTTACCATGGCACCTCCTTTTCTTGTAAGAGCATCGTCGATTAGGTCACCGAGGGTAGGTAATAGTGCCGGGGAAGGTACCTCCGGTTCAACAGCTACAACGGTGGTTGTTGACTCGCCGCGCCCTCCAGTTTAA 1125 0.4773 MENNYQKNDRTTPLCFLFIFILFSGVPFAGAQSNDNTNDNYYNRVSPSMAIIIVILIAALFLMGFFSLYIRRCADSPSGSIRNMAGIAGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGNHTTCPVCRANLVPQPGESVHGVPVFNTEPEDLEAQNDVVESIPEHQNEGSVKESTQPQPQPQVLSLSNTLNRNRTRGSQSGRPRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSGSTATTVVVDSPRPPV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1481 374 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Tpr1g1481 374 SMART ring_2 126 167 IPR001841 -
Tpr1g1481 374 CDD RING-H2_EL5_like 125 168 - -
Tpr1g1481 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 317 - -
Tpr1g1481 374 MobiDBLite consensus disorder prediction 348 367 - -
Tpr1g1481 374 MobiDBLite consensus disorder prediction 203 257 - -
Tpr1g1481 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
Tpr1g1481 374 MobiDBLite consensus disorder prediction 297 316 - -
Tpr1g1481 374 Pfam Ring finger domain 125 168 IPR001841 -
Tpr1g1481 374 PANTHER RING FINGER DOMAIN-CONTAINING 14 317 - -
Tpr1g1481 374 MobiDBLite consensus disorder prediction 348 374 - -
Tpr1g1481 374 SUPERFAMILY RING/U-box 121 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1481 Tpr-Chr1 13567017 13568749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1481 13 365 Rapid Response to Elicitors AT3G05200 46.985 7.88e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1481 K10664 - gmx:100810865 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0246 6 2033333 2037971 Tpr1g1481 1 13567017 13568749 PCT