Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1476 ATGGGTGAAGTGAATCCGTGTAAAAAATTAGCAGACAGGTATCTGAAGCGCGAAGTTCTCGGAGAAGGTACCTATGGTGTTGTTTTCAAAGCCATTGATACCAAGACAGGACAAATGGTTGCAATTAAAAAGATTCGGAAAAGGATCGATGAGCCGTTAGACGGGGTCAATTTTACAGCTCTTAGAGAAATTAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATCGATGTATTCCAATATAAGCAGAACTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGAAATATTTTCCTTTCTCCGGCTGATATTAAATCTTACCTTCAAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGATCACGAGTTCGTTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAGGAAGTACGGTTCAGGGGTAGATGTTTGGGCTACAGCTTGTGTATTTGCTGAGCTTCTTCTTCGTAGACCCTTTTTGGAGGGTTCAACCGATACGCATCAAACACGGACAATTTTCACAGCATTTGGAACCCCGTCACCTTCTCAGTGGCCTGATATGATGTACCTTAAATATTATGTTCGAGAAAAGTATATTCCTGCTCCCCCGTTGCGTTCTTTATTTCCAATGGCGAGTGAGGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACACAGGTACTTTTCTTCTGCACCTCTGCCCACGGATCCAGAAAAGCTTCCAAGACCTGTTCCCAAGAGGGAATCTAGTGTCTCAGATCTGAATTCTTTTCAATTATCACCTTCTAGAAAGATTAGAAGAGTGACGCCAATGTGTGATGGAGTTGAAGGCAATAATGTTGGTAATTTCAAACAGACAGTTGGTGACAATACTGGCACAAATGAGCCCACACCAATGTCACTAAATTTTTCTATCTTTGGATTGAAACCTCCAAATAGACCAACAATTACCAGTGCTGACAGATCACATTTGAAAAGGAAATTAGATTTAGATTTTCAGCAGTCAAAATGA 1215 0.4016 MGEVNPCKKLADRYLKREVLGEGTYGVVFKAIDTKTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHPNIVDLIDVFQYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPDHEFVDQAFARWYRAPELLFGARKYGSGVDVWATACVFAELLLRRPFLEGSTDTHQTRTIFTAFGTPSPSQWPDMMYLKYYVREKYIPAPPLRSLFPMASEDALDLLSKMFTYDPNARISVQKALEHRYFSSAPLPTDPEKLPRPVPKRESSVSDLNSFQLSPSRKIRRVTPMCDGVEGNNVGNFKQTVGDNTGTNEPTPMSLNFSIFGLKPPNRPTITSADRSHLKRKLDLDFQQSK* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1476 404 SUPERFAMILY Protein kinase-like (PK-like) 9 303 IPR011009 -
Tpr1g1476 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tpr1g1476 404 PANTHER CELL DIVISION PROTEIN KINASE 9 348 - -
Tpr1g1476 404 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Tpr1g1476 404 SMART serkin_6 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1476 404 ProSiteProfiles Protein kinase domain profile. 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1476 404 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Tpr1g1476 404 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 348 - -
Tpr1g1476 404 MobiDBLite consensus disorder prediction 301 324 - -
Tpr1g1476 404 Pfam Protein kinase domain 16 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1476 404 Gene3D Transferase(Phosphotransferase) domain 1 97 312 - -
Tpr1g1476 404 CDD STKc_CDK7 13 309 IPR037770 GO:0005675|GO:0008353|GO:0070985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1476 Tpr-Chr1 13473067 13480173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1476 8 400 Core Cell Cycle Gene Families AT1G73690 67.677 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Tpr1g1476 Pkinase 1.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1476 K02202 - jre:109020969 617.846