Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1475 ATGGATCCTCAAGGTCATGGCCAAAACCCGTCTATGGGAGTTGTTGGCAGTGGACAAATGGCCGCATATGGTTCTAATCCGTACCAGCCCAACCATTTAACTGGGTCACCTGGGATGGTTGTTCCCAATGTGGGGAATATTCAACCCGGTGGTCAACCAGATGGAACTCAGCTCGGACAACACCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAACAGCAGCAGCAACAGCTCCAGGCCTTTTGGGGAAATCAGTATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAAAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTGTTTGCTAGGGCATGCGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCTGCCATCACAGGAACTGATATCTTTGATTTCTTGGTTGACATTGTTCCTCGGGAGGACTTGAAAGATGAAGTGCTCGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTATTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCTAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCCCAACCATCAGAGCAACAACCATCGCCTTCAGATCAGTAG 771 0.4643 MDPQGHGQNPSMGVVGSGQMAAYGSNPYQPNHLTGSPGMVVPNVGNIQPGGQPDGTQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1475 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Tpr1g1475 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 256 - -
Tpr1g1475 256 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Tpr1g1475 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 256 - -
Tpr1g1475 256 MobiDBLite consensus disorder prediction 237 256 - -
Tpr1g1475 256 SUPERFAMILY Histone-fold 67 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1475 Tpr-Chr1 13459517 13461663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1475 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 1.04e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr1g1475 Histone 3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1475 K08066 - gmx:100527803 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0254 6 2086947 2101892 Tpr1g1475 1 13459517 13461663 PCT