Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1458 ATGGCACCGACAAGGAAATCTAGAAGTGTGAATAAGCGGTTTGCAAACGACGTTTCTCCTGAGAAAGATGGAGTTAGTTCAAATAAAAACAAACAACGGAAGAAGAAATTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGGGGAGCTACAGCGATTCTATGAGGCATACAGAAAGTATGGGAAAGATTGGAAGAAGGTTGCTGCTGCTGTACGTAACAGATCTATTGAAATGGTTGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCACGGCTTCTGTTGTAGGTCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGAAAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCCTAGTGTCTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCGGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCTGTTGGGAAAAGGACACCCCGAGTCCCAGTTTACCACTCTTACAAGAAAGATGAAAGGGAGAATTATGTTTCTCCTAATAAAAGAAGCTTGAAGTCCACTGGTGATGCTAATGATGATGAAGTTGCAGATGTAGCTTTGGCATTATCCAGGGCTGCACAAAGAGGAGACTCTCCCCTTATTTCACAAACACCACATAGGAGAGCAGAGCAGAAGTCCTCTCCTGCTCAGAGCTTGGAAAGAATGCACCAAATGTCAGAGAAGGCTCGTGCCAAGTTTCGCAATGTTGTGGATGGAGAGTTTTTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGTCAGAGATACTAGTTCGTTGATGGACATGGAAGGAGTGAGCAACACTAGAGTTCTTCTGAAGGGAGGAAAATTTTACAGAAAGAAAGAGAGAGTGGAAAATGTTGGAAATTACCAACTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTAGTTCTTTGAAGGAAAAGAATATGGAGGTTACCAATGAAAAGCTCGAGCAATTCTCTCCAAGAAGTCAGCGGAAAAGAAGCAAAAAACTTTTCTGTGCAGATGAAATCAATGCCTTGAATGCTTTGGAAACCTTAGCCGATCTATCTCTAATGATGCCGACATCTAATGGAGAATCTGAATCATCTATCCAGTTGAAGGGAGACAGAATGAATGTTGATAAAGATGATAAGTCTGCTTTACCTGAAGCAACATCAACAAGTCATAAGAGAAATAAAGTTAAACCTCGCGCTGTCCCTGGAGCTGACACTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATATCAAATGATACCAATGCTGTCTCTGAATCAAAAGACCAGATTCCATTTGCTGATAGAACATGGAAAAGAAAGCCGAAATCCATGAAAGCTGTAGATGATGAGAACAAAACGGTGATTAAAGGAAAACACGCTGATCAGGTTTTTGCATCACCGAAACAATCGAAGATGGTCAAACCACCAGAGGTGTTCTTACGTGTTGATCAGAAGGGTTTAGCAGTTTCATCAACTGCTGAAATTCCACTTTTGAGTGAAGTTAGTTCGCAAACTAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCTAAAGAGAAGTCTTCTGAGAATGTATTGAAAAGCCAACCTAATAAGTACTCTACCCAAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCTCTTGGCAAACCACGGAGGTTCTCTGAACACTTTTTACATGAGGAAAGACAAAAACTTGAACAGTACCGAGACTCAGTGAGGAAACATTATTCTGAGCTGCGGGCTGGTATAAGAGATGGACTTCCGACAGATTTGGCGAGACCATTATGTGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGTAGGATTCAGTTTGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTCGAATCCATTCGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATGACTACAGAACCACAGCTTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCACTCATCGCCTGTGAAGGCCAATATTGATAACCTCTGTGCACTAGCTGCTTGTGCTCAACCGTGTAAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTTGATAAAAAGGAGACAGCATTAACAGAGCTCCGTAATGCAAATAGTGGCATATTGGAAAACCAAAATGGCATAGAATGTTTAAAAGATTCCGAAGGTTTCAAGAAGCATTATGCCACGGTTTCTGATACTATGCTTCAATTGAGGCAGCGTAATACCTACACAGACAACTCTCTGCCACCATGGATGAAGCCCAGAGCAAAGTTCGAAGTACATGATGACCTTCCTAGTGTGTTGGATAGTTCTATGTCACAAGAGTCTAGGTCAACCGTCATTGAAATCATTAAAGGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACAAAGATTGGGCAGGCATTGGATTCTATCGATTATCAGCAGTTGTCCTCCAAGTACAGGTTGCCTGTGATAAGGTCGCAAGATCAAGTGAATGGCAGTTTTTACCATCATAATCAGTCGACTTGCAGAGCATCAGAGCCTTTACTTAATGATGCATCTGGTCCAAAACTGCATAAAGATTCCGAACAAGTTGATATCGAAATACCATCGGAGCTCATCGCTTCATGTGTTGCGACATTAACTATGATACAGAGTTGTACTGAACGGCAATATCCTCCAGCAGATGTGGCTCGGATATTAGATTCTGCTGTTACCAGCCTGCAACCGTGTGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3276 0.42 MAPTRKSRSVNKRFANDVSPEKDGVSSNKNKQRKKKLSDKLGSQWSKGELQRFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESESERESNDAPGSRKPVKRKREKVQPSVSKDPVQSQSVTSGDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDERENYVSPNKRSLKSTGDANDDEVADVALALSRAAQRGDSPLISQTPHRRAEQKSSPAQSLERMHQMSEKARAKFRNVVDGEFLEGSLESRGAENGEYVRDTSSLMDMEGVSNTRVLLKGGKFYRKKERVENVGNYQLDDGGEACSGTEEGLSFSSLKEKNMEVTNEKLEQFSPRSQRKRSKKLFCADEINALNALETLADLSLMMPTSNGESESSIQLKGDRMNVDKDDKSALPEATSTSHKRNKVKPRAVPGADTSTSKKSKLGKDISNDTNAVSESKDQIPFADRTWKRKPKSMKAVDDENKTVIKGKHADQVFASPKQSKMVKPPEVFLRVDQKGLAVSSTAEIPLLSEVSSQTKQRSRRKMIFQRPSMPKEKSSENVLKSQPNKYSTQKEKLSSCLSSYLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRDSVRKHYSELRAGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPSNPFDNMPEALRRQIGARKASFMTTEPQLNGNSSFGGCEMHSSPVKANIDNLCALAACAQPCKVMQHQAKEADIHALSELKRALDKKETALTELRNANSGILENQNGIECLKDSEGFKKHYATVSDTMLQLRQRNTYTDNSLPPWMKPRAKFEVHDDLPSVLDSSMSQESRSTVIEIIKGSRLRAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYHHNQSTCRASEPLLNDASGPKLHKDSEQVDIEIPSELIASCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1458 1091 Pfam DIRP 606 707 IPR033471 -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 10 42 - -
Tpr1g1458 1091 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1091 IPR028306 -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 402 472 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 114 156 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 1 42 - -
Tpr1g1458 1091 CDD SANT 45 79 IPR001005 -
Tpr1g1458 1091 Pfam Myb-like DNA-binding domain 43 80 IPR001005 -
Tpr1g1458 1091 SMART DIRP_2 607 708 IPR033471 -
Tpr1g1458 1091 PANTHER LIN-9 1 1091 IPR010561 GO:0006351|GO:0017053
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 228 257 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 185 200 - -
Tpr1g1458 1091 Coils Coil 823 843 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 171 212 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 114 142 - -
Tpr1g1458 1091 SMART sant 41 89 IPR001005 -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 230 255 - -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 566 580 - -
Tpr1g1458 1091 Gene3D - 3 97 - -
Tpr1g1458 1091 Coils Coil 659 679 - -
Tpr1g1458 1091 SUPERFAMILY Homeodomain-like 40 88 IPR009057 -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 547 580 - -
Tpr1g1458 1091 ProSiteProfiles SANT domain profile. 40 75 IPR017884 -
Tpr1g1458 1091 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1458 Tpr-Chr1 13317770 13329947 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g1458 DIRP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1458 - - gmx:100789533 1606.27