Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1447 ATGAACGGTGGTGAAGGAGACAAAACATTGCCAATAGCAAATGTGAGTAGAATAATGAAACAAAATCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAACTGATGCAAGAATGTGCGACAGAGTTCATAAGTTTTGTGACAGGTGAAGCATCTGACAAGTGTCACAAAGAGAATCGAAAGACTGTTAGTGGAGATGACATCTGTTGGGCTCTTTGTTCATTAGGGTTTGATAACTATGCTGAAGCCATTGGAAGGTATTTGTATAAATTCAGACAAGCTGAACTTGTTAAATTGAATCAGAACAAACTTGAGACATCAAAAGACAAAGTTTGA 339 0.3717 MNGGEGDKTLPIANVSRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYKFRQAELVKLNQNKLETSKDKV* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1447 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr1g1447 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Tpr1g1447 112 SUPERFAMILY Histone-fold 7 99 IPR009072 GO:0046982
Tpr1g1447 112 Gene3D Histone, subunit A 1 112 IPR009072 GO:0046982
Tpr1g1447 112 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 109 - -
Tpr1g1447 112 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tpr1g1447 112 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Tpr1g1447 112 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Tpr1g1447 112 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1447 Tpr-Chr1 13194028 13194845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1447 7 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 70.408 4.86e-50 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr1g1447 CBFD_NFYB_HMF 1.1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1447 K08065 - gmx:100815151 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1447 1 13194028 13194845 Tpr1g1447 1 13194028 13194845 ECH