Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1446 ATGTCAAACATCACAAGTTGTGATAGTGGTAGCTTCTCTACAGAGAATAACAGAGAAGATGGAGTTAAACAAACAGAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACTACAAATAATAACACCAATGGTACTTCCAACACTAATTTACAACCACCTCTTAAGAGAAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTTGTATGTGAAATATGCAACAAAGGTTTTCAAAGAGACCAAAACCTTCAATTGCACCGAAGAGGACACAATTTACCATGGAAGCTAAAACAAAGAACAAGTAATGAAATTATAAAAAGAGTTTATGTTTGTCCTGAACCATCATGTGTTCATCATAATCCTGCAAGAGCACTTGGTGATCTTACTGGTATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGTACAAGGGAATACAAATGTGACTGTGGAACAATATTTTCAAGAAGAGACAGCTTCATAACCCACAGAGCATTCTGTGATGCATTAGCTGAAGAAAACAACAAAGCAAACGAAGGATCAATACAATTGCAACATCAACAAATCCCAAATCTTGTTTCTTCATTATTACCAATAAACCCTCCACAAATTGGTGCAACTTCATCAGAAATATTTAACACTGATCACAAGCATCCATTATCATCACCTCATGATCTCATGTCAGTGCCAGCAAAACAATTCAACAGCAACATATTCACTAGAAGTCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAATATCTTGGAAGAAAATGGGTCATTGCATTTATCAGCTGCTACTTCACCTCATATGTCAGCTACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCCGGTATGAGTATGCCGGAAAAAGCCGTTGCTGGAAACATGATGGCGCCGCCTTTGTTTGGTGTGTCGCAACAGCAAGGACATGCTTTCATGAATCACTACATGCAGCAACAAGCTCAGTATAATAATAACAATTTCAATGCAAATGGAATAATAAATGGGGGAGGTGTAAATGGATCAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAAGCTTTATCCAAGATTATAGAACAAAACAATCAAACTCAAGGCAGCATTAATAGTGTTGGAGGAGTGGGTGTAGGAGTAGGAGGAGGAGGGGGTGCATCAAGTAATAATAATAATGTTGTTATGAACATTGGTGGAAGTAAAGGATCAAGTGGTGGAGATGTAATGACATTGGATTTATTAGGGATAGGAGGGGGAGGTGCACATGGTAATTTCTATGGAGGAGGGGGTACACAACAGCAACAAGCAGAAAGTGCTGCTGCAGCAGCTGATGAAGTTTGGAGAAATTGGTCAACCAAAAATGGAGGATTTGAATCATTTTCAGCAACAAGCAACATTTGA 1596 0.3766 MSNITSCDSGSFSTENNREDGVKQTEILGQFHSPHSHTSTTNNNTNGTSNTNLQPPLKRKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSNEIIKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGSIQLQHQQIPNLVSSLLPINPPQIGATSSEIFNTDHKHPLSSPHDLMSVPAKQFNSNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGMSMPEKAVAGNMMAPPLFGVSQQQGHAFMNHYMQQQAQYNNNNFNANGIINGGGVNGSMNGVDMFNAILDQSKALSKIIEQNNQTQGSINSVGGVGVGVGGGGGASSNNNNVVMNIGGSKGSSGGDVMTLDLLGIGGGGAHGNFYGGGGTQQQQAESAAAAADEVWRNWSTKNGGFESFSATSNI* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1446 531 MobiDBLite consensus disorder prediction 1 56 - -
Tpr1g1446 531 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Tpr1g1446 531 SMART c2h2final6 87 109 IPR013087 -
Tpr1g1446 531 SMART c2h2final6 128 158 IPR013087 -
Tpr1g1446 531 SMART c2h2final6 163 183 IPR013087 -
Tpr1g1446 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Tpr1g1446 531 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tpr1g1446 531 Gene3D Classic Zinc Finger 142 222 - -
Tpr1g1446 531 Gene3D Classic Zinc Finger 87 131 - -
Tpr1g1446 531 SUPERFAMILY beta-beta-alpha zinc fingers 86 183 IPR036236 -
Tpr1g1446 531 MobiDBLite consensus disorder prediction 29 56 - -
Tpr1g1446 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 506 - -
Tpr1g1446 531 MobiDBLite consensus disorder prediction 1 18 - -
Tpr1g1446 531 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1446 Tpr-Chr1 13170124 13174369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1446 49 341 IDZ Gene Family AT3G50700 57.538 3.27e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1446 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1446 - - gmx:100813556 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1446 1 13170124 13174369 Tpr1g1446 1 13170124 13174369 ECH