Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1444 ATGGATCACGCAAAATCGAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGATGGTAAACAATGGAGATGTACAGCTTTATCTATGCCGGATAAAACAGTTTGTGAGAAGCATTACATTCAAGCTAAGAAAAGAGCGGCGAATTCGGCTATGAGAGCTAATCTTAAGAAATCTAAACCTGATTCTGATGTTAATTTAGAAAGTAAGAGTGATGATTTTGATGCTCCACCAGTTTCTACTACTATTAACAATAATAACAATAATCAAAATCGTTCTTCTTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCCGAGGGACTTATCGGTTCATCTGCTGGTGGTAATACTTCAAAGCCTGGTGGTGATGGTGATGATACTCCTGATGGTGTTGATGATGAAGATGCTGTTATGTTAGAAGAGAATTGGGTTTCCAATGACGAGCTGGCTGTTTCTGCTGGTGATGATTCAGCTGGGAAAATGACGCGGACAAGTCTTGATGGGAATGCTGCTACTGAATGTTCTGATGGAGCGTCGGATTCTTCTCAAGAGAATGGCGGGCAGACTTGTCATCAATGCAGGAAGAGTGTTAGGGATAAAGTTACTTGGTGCCTTAAGTGTGATAGGAGAGGATATTGTGATACCTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTTGTCAGTGCTTCCTGTGGTAAAGCAGATCCACCATGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGAGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGACTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTAGGGAAGCTACTGTACATCAGAGTGAAGAACTTCAAACAGAGCATGCAAAAACTACTGAGCGAAACCTATTAAGCAAATTTCCTAATTGGAGATCAAATGAGAATGGAAGTGTTCCATGCCCCCCAAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATGAGTGATGTTGATGGTCCACCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGACCCATTGGTCATATGGAGAGGGGTTCTAGAGACAACAGACGCAAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTCAGATGGATCTGAGATTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAACGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCCGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTAGTCCATACAAGTGAAGTGAAGCTAAAGGACTCGCAGAGAACTAAAGTTGAAATGGAGAAAACTTATAAGGAATCTGAGGTGAAAGAATCTCATGAGGATCCAAATATATGTTCAAGAGGGATTTCACCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCAAGGGTTTGAAGTTTATTCTAGTGCTGGAGAGAATATGGTCAATTGTGAAATTCCATCAAGACAAAATGGGGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTTACTGAATATTTGAAAATGCATTGGAAGGAATTTGGGAAGCCAGATGATATAGTAAGTGCATTTGTTACATGGCCTCTCTATGATGGAGCTATTTATCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGTTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGGTTGGCAGAGGAAGTTCGCCGTTTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTCGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAGATGTCTAAGCAGAGGCAGATCACTTGTGCTTGA 2820 0.4021 MDHAKSNNIDENVGIPDDLRCKRSDGKQWRCTALSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPPVSTTINNNNNNQNRSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSKPGGDGDDTPDGVDDEDAVMLEENWVSNDELAVSAGDDSAGKMTRTSLDGNAATECSDGASDSSQENGGQTCHQCRKSVRDKVTWCLKCDRRGYCDTCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLLSVLPVVKQIHHEQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSEELQTEHAKTTERNLLSKFPNWRSNENGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVDGPPETGLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSMSSWDPLVIWRGVLETTDANMKDDNKMVKAIDCSDGSEIDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDSQRTKVEMEKTYKESEVKESHEDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDQGFEVYSSAGENMVNCEIPSRQNGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKPDDIVSAFVTWPLYDGAIYLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKQRQITCA* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1444 939 MobiDBLite consensus disorder prediction 118 140 - -
Tpr1g1444 939 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Tpr1g1444 939 Gene3D Cupin 464 878 - -
Tpr1g1444 939 MobiDBLite consensus disorder prediction 57 103 - -
Tpr1g1444 939 Pfam JmjC domain, hydroxylase 797 848 IPR003347 -
Tpr1g1444 939 ProSiteProfiles Zinc finger RING-type profile. 203 250 IPR001841 -
Tpr1g1444 939 Pfam WRC 16 56 IPR014977 -
Tpr1g1444 939 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 928 IPR045109 GO:0032454|GO:0033169
Tpr1g1444 939 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 198 263 IPR018866 -
Tpr1g1444 939 Coils Coil 664 684 - -
Tpr1g1444 939 MobiDBLite consensus disorder prediction 81 103 - -
Tpr1g1444 939 ProSiteProfiles JmjC domain profile. 576 869 IPR003347 -
Tpr1g1444 939 SUPERFAMILY Clavaminate synthase-like 485 879 - -
Tpr1g1444 939 MobiDBLite consensus disorder prediction 63 77 - -
Tpr1g1444 939 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 928 - -
Tpr1g1444 939 SMART cupin_9 583 869 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1444 Tpr-Chr1 13161104 13167369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1444 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.25e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr1g1444 JmjC 3.1e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1444 K15601 - gmx:100801287 1462.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1444 1 13161104 13167369 Tpr1g1444 1 13161104 13167369 ECH