Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1443 ATGGTGACCGGAACAAACGAAACTGCACCAAAAGAAACCACACGCGGCGAACACACACAAGAAGAAAGTGAAGACCAAAGTTTCGAACAGTTAGGGTTAGACGCACGTCTTGTTCGTGCTTTACAGAAGAAAGGAATTGAGAAACCAACTCCAATTCAACATGTAGCGATTCCATTGATTCTGGAAGGTAAAGACGTTGTTGCTAGAGCAAAAACAGGGTCTGGGAAAACACTTGCGTATCTTCTTCCGTTGCTTCAGAAATTGTTTACTAGTAATGGTGATAGGAAGAAGTTAGCTCCTAATGTTTTTGTTCTTGTTCCGTCTCGTGAACTTTGTCAACAGATATACGTGGAAGTGAAGTCATTACTTGAGTTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTACTGACTTGCAAGCGGCTCTGGTTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCTAAGTGTTTGTCCAACTCAATACTTGATACGGCATCCATTAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTGTTATCATATGGGTATGAAAATGACATTAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCAGCAACATCAAGTGCCGATGTTGACAAACTAAAAAAGTTGATTTTACACAATCCCTTTATTTTGACTTTGCCTGAAGTGGGAAACCATAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATTTCTTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCTATGTTGAAGTTGGAGTTAGTCCAAAAAAAAGTTCTGATATTCACCAATAACATAGATACGAGTTTCAGATTGAAACTATTCTTAGAAAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAACTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCAACAGATATCAGCCAGTCAACGGATAAGGTTGAAGCACCTAAGGAAAATATTGTTGGATCGCAAAAGAGAAAGTACAAGAAGCTAAAATTAGATTCTGAATTCGGAGTAGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAGTGTGGCCGGATACGTACACCGAATTGGACGTACTGGAAGAGCATATAATTCCGGTGCTTCTATCTCCTTGGTTTCTTCAGATGAGATGGATACCTTCGAAGAAGTACAATCTTTTGTTGGGGACAATGAAAACAATGGCTCAAATACAATTACCGAGTTTCCCTTACTCACCAAGAATGCGGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCAGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGCTGAAGGCCCACTTTGAAACTAATCCAAAAGACCTAGATCTATTGAAACATGACAAAGTTTTGAGCAAGAATGCCCCTCCTCCACACCTTCGGGATGTCCCAGATTACCTAATAGACAAAACAACAAAAGAGGCAAGAGACATGGTTAAGCTTACAAGAGATGCAATGGGTAATAATAATCGCCGACGGGGATCAAAGAGAAAATCAAGAAAAGGTGGTGGTGACCCTCTGATGGCCATCTCTACTGGGGTATCAAAAAGACCACACAAAGGTTTTAAAAAGGACGGTAGAAGCAATGGTTTTAAAAGGGACGGTGGAAGCAATGGCAGAAGCTGTGATAGACAAAAACACAAAAAGACAAAGGCATTTTGA 1842 0.4045 MVTGTNETAPKETTRGEHTQEESEDQSFEQLGLDARLVRALQKKGIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTSNGDRKKLAPNVFVLVPSRELCQQIYVEVKSLLELCRVQLKVVQLNSNMLATDLQAALVGPPDILISTPACVAKCLSNSILDTASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTDKVEAPKENIVGSQKRKYKKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVAGYVHRIGRTGRAYNSGASISLVSSDEMDTFEEVQSFVGDNENNGSNTITEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNAPPPHLRDVPDYLIDKTTKEARDMVKLTRDAMGNNNRRRGSKRKSRKGGGDPLMAISTGVSKRPHKGFKKDGRSNGFKRDGGSNGRSCDRQKHKKTKAF* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1443 613 Pfam Helicase conserved C-terminal domain 266 408 IPR001650 -
Tpr1g1443 613 Gene3D - 242 446 IPR027417 -
Tpr1g1443 613 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 14 513 - -
Tpr1g1443 613 CDD SF2_C_DEAD 255 417 - -
Tpr1g1443 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 238 IPR014001 -
Tpr1g1443 613 MobiDBLite consensus disorder prediction 541 613 - -
Tpr1g1443 613 MobiDBLite consensus disorder prediction 584 603 - -
Tpr1g1443 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 274 454 IPR001650 -
Tpr1g1443 613 CDD DEADc_DDX56 33 240 - -
Tpr1g1443 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 239 IPR027417 -
Tpr1g1443 613 MobiDBLite consensus disorder prediction 1 28 - -
Tpr1g1443 613 SMART helicmild6 295 408 IPR001650 -
Tpr1g1443 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 433 IPR027417 -
Tpr1g1443 613 SMART ultradead3 45 258 IPR014001 -
Tpr1g1443 613 Pfam DEAD/DEAH box helicase 50 227 IPR011545 GO:0003676|GO:0005524
Tpr1g1443 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 26 54 IPR014014 GO:0003724
Tpr1g1443 613 MobiDBLite consensus disorder prediction 11 25 - -
Tpr1g1443 613 Coils Coil 478 498 - -
Tpr1g1443 613 Gene3D - 3 240 IPR027417 -
Tpr1g1443 613 PANTHER RNA HELICASE 14 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1443 Tpr-Chr1 13150758 13158282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1443 27 448 Eukaryotic Initiation Factors Gene Family AT3G19760 25.355 1.88e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1443 K14810 - gmx:100800749 949.503