Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1439 ATGGATTCCAACAACAAATCCTCCGATCAAGTAATTTCAGAAATGGTTGAAATGGGTTTTGAGCATTCCAAAATTCTTGAAGCAATTAAAGTAGTGGGTCTATCGATTCCAAGCATTGTGGACCATATTTTCAATACTAGTACTAGTAGTAGCAGTAGCAGTAATCGTGAATCATCCACTACCCACATCTCAAAATCACTTCCAAGTAATGGGAAAGCTCTCAAAAAACGAACTTTTTCATCTTCTCTTCAAGTTCCAAAATCGAAAACAATCAACCATTATTTCCAATCTAGTAGTAAAGTTAATGAGAAAAACAAAAATGTTGTTGTTGATGTTAATGATGGTGGTGATGATGACGTGGAAGAGCATAAGGAGTCTTTACCTCAAATGGGATTTGATCTTGATCCCGATGTTGCATCTGATTGGGAGATGAGAGCTAGCATTCTGTTGCAAAAGCATTTTGGTTTTTCTTCGTTGAAAAGTTTTCAGAAGGAAGCTTTGTCTGCTTGGATTTCTCGTAGAGATTGTCTTGTCCTGGCTGCTACTGGATCTGGGAAATCCCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGTCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCTTGTTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGTGGCATGTATAGTATAGTGTATATTTGCCCAGAGACAGTTCTAAGATTGATTCAACCTCTGCAAAAGCTTGCAGAAAGCCATGGTATTGCTTTGTTCGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGCCATGATTTTCGTCCAGCTTACAGCCGACTGTCTGCATTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCTTAAAATTTGATATACCTGTAATGGCATTGACAGCTACAGCTACAAAGAGAGTTCGGGAAGACATTTTAAAATCGCTGCGTATGTCAAAAGATACAAGTGTTGTTCTCACATCATTTTTTCGACCTAATTTACGGTTCATGGTAAAGCATAGTAGAACATCATGGGCTTCTTATGAGAGCGATTTTCATGAATTGATTAAAGTATATGGTGGAAATAAAAAAGCTTTCACCTCAGATGAGGCAGATGATGTTTCCAATTGCTCTGATGCTTCTGATACAGACAGTGTTTCTTCTGATAATGTGGATGACAACCAAGATGACTATGATGAAAGAGATATTAGTTCCATGCACGCAAGAAACACCGGCAATCATAAAAAAAGAAGAAAATTGACAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTACCTGCGGTGAATTTTGTGTACAACCTCCTCCGAAGCAATGTGAGTTATCTGAGACAGTTGATCCACCTGCAAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGAACGAGGACCAACAATTATATATGTACCCACCAGAAAAGATACAGTGAGAATTGCAAAGTATCTATGCAAGTCTGGTGTGAAAGCTGCTGCTTACAATGCCGGGCTGCCCAAGTTGCACCTAAGAAGGACTCATAAAGAGTTTCATGAAAATACCTTAGAGGTTGTTGTTGCAACCATAGCATTTGGAATGGGAATTGACAAATCGAATGTTAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTATTATCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCGTCACTTTTGCCGAGTCGTAGAAGTGAAGAAATGACTAAACTAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAAACACTTGTAGAATACTTCGGAGAGGATTTCAGCCATCAGAAATGCCTCTTATGTGATGTGTGCACTAATGGACCACCTCAAAGACAGAATCTTAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGGGGCCCATAATGCACATATATATTCCATGGATTCCTCATATAATGATGATATCCATTTCAATTCTAAGGATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTAGTTAGAAGTATAAGGGAACAGTTTCAAAAGTTTTTAACCACTGATATATTGTGGTGGAGAGGCCTTAGTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGAGATGATAAGACAAATGTTCAGATAAAATACCCTGAGCTAACAGAACTAGGTTTGGAATTTGTGAAGTCCATGAATGAAGAAACTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAATTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGCAACAAGATAGAAGTCCAACGAAGCGAAAGAGTCCCAGAAAGCAAAAAAAGAGGAGAGGTAAAAAAGTGAAACCTGATTTGAGGACTTCCCGAGGTAGACTAACAGCAAAACTCACAAAACATAAGTGA 2613 0.3915 MDSNNKSSDQVISEMVEMGFEHSKILEAIKVVGLSIPSIVDHIFNTSTSSSSSSNRESSTTHISKSLPSNGKALKKRTFSSSLQVPKSKTINHYFQSSSKVNEKNKNVVVDVNDGGDDDVEEHKESLPQMGFDLDPDVASDWEMRASILLQKHFGFSSLKSFQKEALSAWISRRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMSGMYSIVYICPETVLRLIQPLQKLAESHGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTTGKLKSLKFDIPVMALTATATKRVREDILKSLRMSKDTSVVLTSFFRPNLRFMVKHSRTSWASYESDFHELIKVYGGNKKAFTSDEADDVSNCSDASDTDSVSSDNVDDNQDDYDERDISSMHARNTGNHKKRRKLTIEFLENDVDVFQSADDLDVTCGEFCVQPPPKQCELSETVDPPAKPEKRLKMLKEPLERGPTIIYVPTRKDTVRIAKYLCKSGVKAAAYNAGLPKLHLRRTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMTKLAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHQKCLLCDVCTNGPPQRQNLKEEACILLQTIGAHNAHIYSMDSSYNDDIHFNSKDRRLGERPSLMTLVRSIREQFQKFLTTDILWWRGLSRILEAKGYIREGDDKTNVQIKYPELTELGLEFVKSMNEETFYVYPEADMLLETKIDKPFSSFSEWGKGWADPEIRRQRLERMQQDRSPTKRKSPRKQKKRRGKKVKPDLRTSRGRLTAKLTKHK* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1439 870 SMART ultradead3 155 360 IPR014001 -
Tpr1g1439 870 Gene3D - 607 790 IPR036388 -
Tpr1g1439 870 MobiDBLite consensus disorder prediction 392 409 - -
Tpr1g1439 870 MobiDBLite consensus disorder prediction 391 433 - -
Tpr1g1439 870 MobiDBLite consensus disorder prediction 837 854 - -
Tpr1g1439 870 Pfam DEAD/DEAH box helicase 162 330 IPR011545 GO:0003676|GO:0005524
Tpr1g1439 870 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 857 - -
Tpr1g1439 870 Gene3D - 117 351 IPR027417 -
Tpr1g1439 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 343 IPR014001 -
Tpr1g1439 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 208 IPR027417 -
Tpr1g1439 870 MobiDBLite consensus disorder prediction 47 85 - -
Tpr1g1439 870 CDD DEXHc_RecQ 150 350 - -
Tpr1g1439 870 Pfam Helicase conserved C-terminal domain 486 594 IPR001650 -
Tpr1g1439 870 MobiDBLite consensus disorder prediction 822 870 - -
Tpr1g1439 870 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 857 - -
Tpr1g1439 870 Pfam RecQ zinc-binding 618 667 IPR032284 -
Tpr1g1439 870 Gene3D - 477 604 IPR027417 -
Tpr1g1439 870 SMART helicmild6 514 595 IPR001650 -
Tpr1g1439 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 648 IPR001650 -
Tpr1g1439 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 605 IPR027417 -
Tpr1g1439 870 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Tpr1g1439 870 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 149 378 IPR004589 GO:0004386|GO:0006310
Tpr1g1439 870 MobiDBLite consensus disorder prediction 822 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1439 Tpr-Chr1 13125637 13132332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1439 489 613 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 8.87e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1439 K10900 - gmx:100793222 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1439 1 13125637 13132332 Tpr1g1439 1 13125637 13132332 ECH