Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1424 ATGGGTCGTCTGGATGCAGCTGGTTCCAAGGGGAAGAAGAAGGGAGTGATAACATTCACCATTGATTGTGCCAAACCAGTTGAAGACAAAATCATGGACATTGCCTCTCTCGAAAAGTTTCTTCAAGAAAGGATTAAGGTTGGTGGTAAACCTGGTGCTCTTGGTGATGCTGTTACCGTTTCACGTGAGAAGAGCAAGATCACTGTTACTTCTGATACCAACTTCTCTAAACGGTATCTCAAGTACTTAACTAAGAAGTATTTGAAGAAACACAATGTACGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGACAGAAATGTTTACGAATTGAGGTACTTCAACATTGCTGAAAATGAAGGAGAGGAAGAAGATTAA 378 0.4074 MGRLDAAGSKGKKKGVITFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSKITVTSDTNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1424 125 Pfam Ribosomal L22e protein family 17 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tpr1g1424 125 PANTHER 60S RIBOSOMAL PROTEIN L22 5 125 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tpr1g1424 125 Gene3D - 6 125 IPR038526 -
Tpr1g1424 125 PANTHER - 5 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1424 Tpr-Chr1 12998722 13003486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1424 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.800 1.14e-63 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1424 K02891 - nnu:104598935 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1424 1 12998722 13003486 Tpr1g1424 1 12998722 13003486 ECH
Tpr6g0301 6 2429666 2431177 Tpr1g1424 1 12998722 13003486 PCT