Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1417 ATGGGCATCGATCTTAAAGCAGGAGGTAAGAGCAAGAAGACCAAAAGAACAGCACCAAAGTCCAATGATATCTATCTCAAGCTTTTGGTCAAGCTTTATCGGTTCCTTGTTCGGAGAACTGGCAGCAATTTCAATGCTGTTATCCTCAAGAGGTTGTTCATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGATTGATCAAGTATACTAAGGGCAAGGAAGGTAAAATTGCTGTGGTGGTGGGTACTATAACTGATGATATCCGTGTTTATGAAGTTCCAGCCATTAAGGTTACAGCACTCAGGTTTACTGAGACCGCAAGGGCAAGAATTGAGAAGGCCGGTGGTGAATGCTTTACATTCGATCAGTTGGCCCTTAGGGCACCATTGGGACAAAACACTGTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCGTGCTCCTGGTGTCCCACACAGCCACACCAAACCATATGTGAGAGCAAGTGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCCGTGGATTCAGAGTTTAA 564 0.4521 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTKGKEGKIAVVVGTITDDIRVYEVPAIKVTALRFTETARARIEKAGGECFTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRASGRKFEKARGKRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1417 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Tpr1g1417 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Tpr1g1417 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Tpr1g1417 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Tpr1g1417 187 Gene3D - 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1417 Tpr-Chr1 12970759 12972632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1417 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.419 2.72e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1417 K02883 - gmx:100791657 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1417 1 12970759 12972632 Tpr1g1417 1 12970759 12972632 ECH
Tpr6g0305 6 2481227 2483414 Tpr1g1417 1 12970759 12972632 PCT