Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1416 ATGTCAGGAGGAGATGCACAGAAAGGAAGAAGAGTCGTCGTAATCGGCGTATCCTCCTTGTTATTGGTGGCTATGGTTGTTGCTGTCACAGTTGGAAATCGAAACCCAAATGGTTTGGAAGATGATATAGAGGACAATCAGAGAAATCATGTTGCTTCCACAATGAGAGCAGTAAAAACTGTTTGTCATCCGGCCGAATATAAAAAGGAATGTGAGGAGGCCCTCACATCAGAAGCGAAGGCCGGTAATGTCACCGACCCAAAAGAACTTATTAAAATAGCATTCAATGTTACCATAAAAAAAATTGGTGATAAACTTAAAGAAACTAATCTAATGGAAGAGGTTGAGAAGGATCCTAGATCCAAGGATGCACTTGATACTTGCAAGCAACTTATGGATCTCTCCATTGGTGAATTCATAAAGTCACTTGATGGAATGGGGGAATTTCATCTTCAAGATCTTGACAAATTCCTCATGAATGTGAAGGTTTGGCTCAATGGTGCAGTTACATACATGGATACATGCGTGGATGGGTTCGAGAACACTACCACCGATGCTGGTCAGAAGATGAAGGAGTTATTAACATCAAGCATGCACATGGGTAGCAATGCCCTTGCTATAATTTCCGATTTTGCTGATACTGTCGCTGATTGGAACGTCACCAAATTTCTCGGTCGTCGTCTCTTTCATGATGTTTCAGAGACTCCTTCTTGGGTTGATCATCGCAAACTCCTTGATGCAAAGACAAAGTCATTCAAACACAAGCCTAATATTACCGTAGCTTTAGATGGTAGCGGTGATGTTAAGAGCATTAATGAGGCATTGACAAAGGTTCCAGAAAAGAGCAAAAAGCCATTTTTGATCTTCATTAAGGCGGGTGTTTATGCGGAGTATGTTGAAGTTACCAAGCATATGACCAATGTCGTGTTTGTTGGTGAGGGTGGTAAGAAGTCAGTAATCACCGGCAACAAAAACTTTATCGATGGAATTAACACCTACAGAACCGCCACTGTTGCTATTCAAGGAGACCATTTTACTGCCATCAACATGGGTTTTGAGAATTCTGCCGGTCCACACAAACATCAAGCAGTGGCACTAAGGGTTCAAGGAGACAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACACCATGCGTCAATTCTACCGTGATTGCACCATTTCAGGTACCATTGACTTTATCTTTGGTAATGCTTTAGCCGTTTTCCAAAACTGCAAATTCGTGGTCCGTAAGCCTATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGGAAAGAAAAATTCCAACCATCAGCAATAGTCATCCAAGGAGGCTCCATTGTTTCCGACCCTGAGTTCTACCCGGTCAGGTTTGACAACAAGGCCTACTTAGCCCGTCCATGGAAGAACTTCTCCAGGACTATCATTATGGATACCTTCATCGATGATTTGATTCAACCAGATGGTTATTTGCCATGGCAAACAGAATTTGGTTTTTCTGGCATGGACACTTGCTTCTATGCTGAGTACCATAACTATGGCCCCGGTTCAGACAAATCAAAGCGTGTGAAATGGGCTGGAATCTGGAACCTCAATTCCAAGGCAGCACACTGGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATCGAGGATAAAGGAATTCCTTTCTTTGCCAGTATTCCTGAACACCACAAGCACAAAAAGACAGTGCTTAAATGGTGA 1752 0.4258 MSGGDAQKGRRVVVIGVSSLLLVAMVVAVTVGNRNPNGLEDDIEDNQRNHVASTMRAVKTVCHPAEYKKECEEALTSEAKAGNVTDPKELIKIAFNVTIKKIGDKLKETNLMEEVEKDPRSKDALDTCKQLMDLSIGEFIKSLDGMGEFHLQDLDKFLMNVKVWLNGAVTYMDTCVDGFENTTTDAGQKMKELLTSSMHMGSNALAIISDFADTVADWNVTKFLGRRLFHDVSETPSWVDHRKLLDAKTKSFKHKPNITVALDGSGDVKSINEALTKVPEKSKKPFLIFIKAGVYAEYVEVTKHMTNVVFVGEGGKKSVITGNKNFIDGINTYRTATVAIQGDHFTAINMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKEKFQPSAIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDTFIDDLIQPDGYLPWQTEFGFSGMDTCFYAEYHNYGPGSDKSKRVKWAGIWNLNSKAAHWFAPSKFFHGGDWIEDKGIPFFASIPEHHKHKKTVLKW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1416 583 CDD PMEI-like_3 60 212 - -
Tpr1g1416 583 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Tpr1g1416 583 Gene3D - 251 570 IPR012334 -
Tpr1g1416 583 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Tpr1g1416 583 PANTHER PECTINESTERASE 10 570 - -
Tpr1g1416 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Tpr1g1416 583 SMART PMEI_2 53 207 IPR006501 GO:0004857
Tpr1g1416 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 209 IPR006501 GO:0004857
Tpr1g1416 583 Pfam Plant invertase/pectin methylesterase inhibitor 57 207 IPR006501 GO:0004857
Tpr1g1416 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 211 IPR035513 -
Tpr1g1416 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Tpr1g1416 583 PANTHER PECTINESTERASE 10 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1416 Tpr-Chr1 12966436 12968450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1416 5 566 Carbohydrate Esterase AT3G05610 49.030 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1416 K01051 - gmx:100776244 919.457