Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1415 ATGTCAGGAGGAGAGGCACAGAAAGGAAGAAGAGTCGCCATAATTGGCGTATCCTCCTTGTTATTGGTGGCTATGGTTGTTGCTGTCACTGTTGGTAACCAAAATGGTATGGAAGATGATATAGAGAACAATAGGAAAAATCATGTTGCTTCCACAGTGAGAGCAGTACAAACCATTTGTCATCCCGCCGAATACAAGAAGGAATGTGAGGATGCCCTCACATCAGAAGCGGAGGCCAACAATGTCACCGACCCAAAAGAACTTATTAAAATAGCATTCAATGTTACCATAAAAAAAATTGGTGAAAAACTCGTAGAAACGGATCTAATGGATGAGGTTGAGAAGGATCCTAGATCCAAGGATGCACTTGATACTTGCAAGCAACTTATGGATCTCTCCATTGGTGAATTCACAAAGTCACTAGATGGAATGGGCCAGTTTCATCTTCAAGATCTTGACAAATTCCTCATGAATGTGAAGGTTTGGCTCAATGGTGCAGTTACATACATGGATACATGTGTGGATGGGTTCGAGAACACTACCACCGATGCTGGTCAGAAGATGAAGGAGTTATTAACATCAAGCATGCACATGAGTAGCAATGCCCTTGCCATCATTTCCGATTTTGCTGATACTGTCTCTGATTGGAATGTCACCAAATTTCTCGGACGTCGTCTCCTTCATGATTCCGAGACTCCTTCTTGGGTTGATCATCGCAGACTCCTTGATGCAAAGACAAACTCATTCAAACACAAGCCTGATGTTACTGTAGCTTTAGATGGTAGTGGTGATGTTAAGAGCATTAATGAGGCATTGACAAAGGTTCCCGAGAAGAGCAAAAAACCATTTATAATCTACATTAAGGCGGGTGTTTATGCAGAGTATGTTGAAGTTAACAAGCATATGACCAATGTCGTGTTTGTTGGTGAGGGTGGTAAGAAGTCAGTAATCACCGGCAACAAAAACTTTATCGATGGAATTAACACCTACAGAACCGCCACTGTTGCTATTCAAGGAGATCACTTTACTGCCATCAACATGGGTTTTGAAAACTCTGCCGGTCCACACAAACATCAAGCAGTGGCACTAAGGGTTCAAGGAGATAAGTCCATCTTCTTCAATTGCTCAATGGATGGTTATCAAGACACACTTTATGTACACACCATGCGTCAATTCTACCGGGATTGCACCATTTCAGGTACCATCGACTTCGTCTTTGGTAATGCTTTAGCCGTTTTCCAAAACTGCAAATTCGTGGTCCGTAAGCCTATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGGAAAGAAAAATTCCAACCATCAGCAATAATCATCCAAGGAGGCTCCATTGTTTCCGACCCTGAGTTCTACCCGGTCAGGTTTGACAACAAGGCCTACTTAGCCCGTCCATGGAAGAACTTCTCTAGGACTATCATTATGGATACCTTCATCGATGATTTGATTCAACCCGATGGTTATTTGCCATGGCAAACAGAATTTGGTTTCGCCGGCATGGACACTTGCTTCTACGTTGAGTACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGAAATGGCCTGGAATTTGGAACCTTAATTCCAAGGCGGCACATTGGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATCGAGGAAACCGGAATTCCTTTCTTTTCCGGTATTCCTGAACACAAAAAGCACAACAAGACAGTGCATAAATGGTGA 1743 0.4309 MSGGEAQKGRRVAIIGVSSLLLVAMVVAVTVGNQNGMEDDIENNRKNHVASTVRAVQTICHPAEYKKECEDALTSEAEANNVTDPKELIKIAFNVTIKKIGEKLVETDLMDEVEKDPRSKDALDTCKQLMDLSIGEFTKSLDGMGQFHLQDLDKFLMNVKVWLNGAVTYMDTCVDGFENTTTDAGQKMKELLTSSMHMSSNALAIISDFADTVSDWNVTKFLGRRLLHDSETPSWVDHRRLLDAKTNSFKHKPDVTVALDGSGDVKSINEALTKVPEKSKKPFIIYIKAGVYAEYVEVNKHMTNVVFVGEGGKKSVITGNKNFIDGINTYRTATVAIQGDHFTAINMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKEKFQPSAIIIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDTFIDDLIQPDGYLPWQTEFGFAGMDTCFYVEYHNYGPGSDKSKRVKWPGIWNLNSKAAHWFAPSKFFHGGDWIEETGIPFFSGIPEHKKHNKTVHKW* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1415 580 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Tpr1g1415 580 Gene3D - 248 567 IPR012334 -
Tpr1g1415 580 PANTHER PECTINESTERASE 10 568 - -
Tpr1g1415 580 SMART PMEI_2 51 205 IPR006501 GO:0004857
Tpr1g1415 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 207 IPR006501 GO:0004857
Tpr1g1415 580 CDD PMEI-like_3 58 210 - -
Tpr1g1415 580 PANTHER PECTINESTERASE 10 568 - -
Tpr1g1415 580 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
Tpr1g1415 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Tpr1g1415 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Tpr1g1415 580 Pfam Plant invertase/pectin methylesterase inhibitor 55 205 IPR006501 GO:0004857
Tpr1g1415 580 SUPERFAMILY Pectin lyase-like 252 566 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1415 Tpr-Chr1 12958754 12961118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1415 5 567 Carbohydrate Esterase AT3G05610 48.496 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1415 K01051 - gmx:100776244 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0312 6 2532161 2535022 Tpr1g1415 1 12958754 12961118 PCT