Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1414 ATGGTTGACGAAGATACACAAGGAAAGAGGAGAATCATCATAATCGGCGTATCAACATTTTTACTAGTGGCTATGGTGGTTGCAGTTACCGTTGGCGTAAATTTTAAATCTATCAATGGTTCTGATTCTGAAAATAGCACCGACGATAAGCCTCGCGTGGCTACAACTGTAAAAGCAGTGAAAGCCTTTTGCAGACCAACCGATTATAAAAAAGAATGCGAGGAGAGTCTATTAGCAAATGTCGGTAACACAACAGATTCAAGAGAACTCATTAAATTTGCTTTCAATATTACCATTGGAAAAATCGGGGAAGGAATCAAGAAAACCAATGTATTGCAAGAGGTTGAGAAGGAACCTAGGGCGAAAATGGCGCTTGACACATGCAAGAAATTAATGGATCTATCAATTGGCGAATTCGATAGGTCTCTTGAGAGAATAAAAAAATTTGACCTCGACAATCTTGAAAGTTTTCTAATGAGTTTGAAAGTTTGGCTAAGTGGTGCAATTACATATCAAGAAACTTGTTTAGATGCTTTTGAGAATACTACTAGCGATGCTAGCGGGAAAATGAAGACGATCTTAACGTCTTCAATGCACATGAGTAGCAATGCACTTGCAATTATTTCCGATTTGTCGGATAATCTTTTGAATTTCAATTCAAATTCGAATTCGACAGGAGACGGACGTCAACTTATCGAAAATAATAAGAGTAAATATGTCAGTGAACAAATTGTTTCACATGATGATGTTAATGAGGTTCCTTCTTGGGTTGGTGATGATTCAAGTGTTGGTGTTCGTAGACTTCTTAATGTACCTCAAAATAAACTAAACCCTAGTGCGGTTGTGGCTAAAGATGGTAGTGGGAAGTTTAAGAGTATTAATGATGCTTTGAAGCAAGTTCCAGAAAAGAACCAAAAACCATTTGTTATTTATATCAAGGAAGGTGTTTATCAGGAGTATGTTCAAATTACCAAAAAAATGACTCATGTTGTGTTTTTTGGTGAAGGTCCCAACAAGACACGAATTGTTGGAAACAAAAATTTCATAGATGGGATTAACACTTACAATACCGCCACTGTTGCTGTCCAAGGAGATTATTTTGTGGCCATCAATATGGGATTTGAGAATTCAGCAGGACCTCACAAACATCAAGCAGTAGCCATAAGGGTTCAAGCGGACAAAACAATCTTTTACAGATGTTCCATGGATGGATATCAAGACACGTTATATACTCACGCATTGCGTCAGTATTATCGCGAATGTACAATTTCAGGCACCATTGATTTTGTCTTTGGTGATGCAATAGCTGTTTTCCAAAACTGCACTTTCATTGTAAGAAAACCATTACAAAACCAACAATGCATTGTAACTGCACAAGGTAGGAAAGAGATCCATCAACCATCTGGAATAGTTATTCAAGATTGCTACATTCTGCCTGAAAGTCAAAATGTAACACTCGAACACAAAACATATCTCGCGCGTCCATGGAAGAATTTCTCAAGGACTGTCTTCATGAAAACTTACATTGGTGATTTGATTCAACCTGATGGATATATGCCATGGCAAGGACCAAATGGCACTCTAACTGGAATGAATACTTGCTTTTATGCTGAGTATGATAATATTGGCCCCGGTTCAGATAAATCAAAACGCGTAAAATGGCCCGGAGTTAAGGTTCTTAATTCAAAAGCTGCAAGTAATTTTTTACCATCTATGTTCTTTCATGGAGATGATTGGATTAAGGCTACTAGAATTCCTTACTCTTCTGGTGAGAAACCCCCTAAGCAGTAA 1791 0.3763 MVDEDTQGKRRIIIIGVSTFLLVAMVVAVTVGVNFKSINGSDSENSTDDKPRVATTVKAVKAFCRPTDYKKECEESLLANVGNTTDSRELIKFAFNITIGKIGEGIKKTNVLQEVEKEPRAKMALDTCKKLMDLSIGEFDRSLERIKKFDLDNLESFLMSLKVWLSGAITYQETCLDAFENTTSDASGKMKTILTSSMHMSSNALAIISDLSDNLLNFNSNSNSTGDGRQLIENNKSKYVSEQIVSHDDVNEVPSWVGDDSSVGVRRLLNVPQNKLNPSAVVAKDGSGKFKSINDALKQVPEKNQKPFVIYIKEGVYQEYVQITKKMTHVVFFGEGPNKTRIVGNKNFIDGINTYNTATVAVQGDYFVAINMGFENSAGPHKHQAVAIRVQADKTIFYRCSMDGYQDTLYTHALRQYYRECTISGTIDFVFGDAIAVFQNCTFIVRKPLQNQQCIVTAQGRKEIHQPSGIVIQDCYILPESQNVTLEHKTYLARPWKNFSRTVFMKTYIGDLIQPDGYMPWQGPNGTLTGMNTCFYAEYDNIGPGSDKSKRVKWPGVKVLNSKAASNFLPSMFFHGDDWIKATRIPYSSGEKPPKQ* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1414 596 ProSitePatterns Pectinesterase signature 1. 304 323 IPR018040 -
Tpr1g1414 596 SUPERFAMILY Pectin lyase-like 279 589 IPR011050 -
Tpr1g1414 596 CDD PMEI-like_3 62 212 - -
Tpr1g1414 596 PANTHER PECTINESTERASE 10 593 - -
Tpr1g1414 596 Gene3D - 273 591 IPR012334 -
Tpr1g1414 596 Pfam Plant invertase/pectin methylesterase inhibitor 59 207 IPR006501 GO:0004857
Tpr1g1414 596 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Tpr1g1414 596 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 211 IPR006501 GO:0004857
Tpr1g1414 596 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 213 IPR035513 -
Tpr1g1414 596 PANTHER PECTINESTERASE 10 593 - -
Tpr1g1414 596 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Tpr1g1414 596 Pfam Pectinesterase 280 577 IPR000070 GO:0030599|GO:0042545
Tpr1g1414 596 SMART PMEI_2 55 207 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1414 Tpr-Chr1 12955106 12957169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1414 3 590 Carbohydrate Esterase AT3G05610 47.049 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1414 K01051 - gmx:100794799 788.104