Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1413 ATGAAAACATCAACTACCTTGTACACTTTTGTTTCCTTCATTACTATCCTCTTCTTCCTCTTCTCTCCCTCTCTAGCATCTCTTCTTCCCTCCCCAAATACCACATGCAACATTACACCTTACCCATCTTTCTGTACAACTACTCTCCCTCCTAACTATTTATCCATACATGATCAAACCCTTTTCTTCATTCAACAATCTTTATCAATAACTAATACCATTTTTCAATTAATCTCTTCTTATTTTAACCAATCCAACATTCCATATTCCACTTTACTTGTTCTGCAAGATTGTCTTAATCTTTCTGAATTAAATATTGATTTCTTGTCCAATGTTATCCAAGCCATAGAAATTAATACTAATACAATGAGTACTAATCAAGGTTATGATTTGCAAACCTTACTTAGTGCTGTTTTAACTAATCATCAAACATGTTTAGATGGTTTTAATGAGGTTAATCCTTATCCAAATATTAGTACTACTTTATCAAACCCTCTTTCTGATGGGACTAAATTTTATAGGATATCTCTTTCTTTTTTCAATCAATATCGGGTTAACACCGTCGTTGCAAGATTAACAGAAAAAGCAATTACAATGAATAATAGAAAATTGTTACAAACAAGTGTTGACAATGTGATGGTGACAGAAAGAGTGATTGTTAACCCTGATGGATCTGGAGATTTTGTTACAATAAATGAAGCTGTGGATGCTGCACCTAACAAAACAGGCACCGACAATGGTTATTATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTCTATTTCTAAGAGTAAAGAGAATCTAATGATTGTCGGAGATGGTATCGGTCGGACTGTGATTACCGGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTTCAGTCTGCAACTTTTGCTGTAACTGGAAAAGGATTTGTTGCTGTGAACATAACATTTCAAAACACTGCCGGATCAAGCAAGCATCAAGCAGTTGCAGTGAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACGTTATACGCGCATTCTCTCCGACAATTCTACAAAAACTGTAACATTTACGGCACAGTTGATTTCATATTCGGCAATGCAGCAGCAATATTCCAAAACTGTAATATATATCCAAGACTCCCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGATTTTCAATATGGAATTGTTACATTGTAGCAGCTAGTGAATTAGGGGGTGCAAATAATAATTATAATGGTATAAAGACATATTTGGGTAGGCCTTGGAAGGAATATTCAAGAACAATTTATATGCAATGTTTTATTGATGGTTTAATTGATTCAAAGGGTTGGATTGAATGGTTAGATGATTTTGCATTAAACACATTGTATTATGCAGAGTTTGCTAATTGGGGACAAGGTTCATATACTAGTAATAGGGTCACATGGAAAGGATACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTGTACAAATTTATTCAAGGTGACATGTGGTTGCCTATGACAGGAGTGCCTTTTAGAGCTGGATTACAGTGA 1605 0.3508 MKTSTTLYTFVSFITILFFLFSPSLASLLPSPNTTCNITPYPSFCTTTLPPNYLSIHDQTLFFIQQSLSITNTIFQLISSYFNQSNIPYSTLLVLQDCLNLSELNIDFLSNVIQAIEINTNTMSTNQGYDLQTLLSAVLTNHQTCLDGFNEVNPYPNISTTLSNPLSDGTKFYRISLSFFNQYRVNTVVARLTEKAITMNNRKLLQTSVDNVMVTERVIVNPDGSGDFVTINEAVDAAPNKTGTDNGYYVIYVVAGIYNEYVSISKSKENLMIVGDGIGRTVITGNRSVVDGWTTFQSATFAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCNIYGTVDFIFGNAAAIFQNCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASELGGANNNYNGIKTYLGRPWKEYSRTIYMQCFIDGLIDSKGWIEWLDDFALNTLYYAEFANWGQGSYTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPMTGVPFRAGLQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1413 534 Pfam Plant invertase/pectin methylesterase inhibitor 33 174 IPR006501 GO:0004857
Tpr1g1413 534 Pfam Pectinesterase 218 519 IPR000070 GO:0030599|GO:0042545
Tpr1g1413 534 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Tpr1g1413 534 Gene3D - 211 533 IPR012334 -
Tpr1g1413 534 SUPERFAMILY Pectin lyase-like 217 532 IPR011050 -
Tpr1g1413 534 CDD PMEI-like_3 34 183 - -
Tpr1g1413 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 13 532 - -
Tpr1g1413 534 SMART PMEI_2 27 179 IPR006501 GO:0004857
Tpr1g1413 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 168 IPR006501 GO:0004857
Tpr1g1413 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 183 IPR035513 -
Tpr1g1413 534 PANTHER PECTINESTERASE 13 532 - -
Tpr1g1413 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 182 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1413 Tpr-Chr1 12918646 12921333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1413 13 533 Carbohydrate Esterase AT4G02330 48.682 1.85e-179 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1413 K01051 - gmx:100810329 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1413 1 12918646 12921333 Tpr1g1413 1 12918646 12921333 ECH