Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1407 ATGTCAACTGATCCGTTGCTTCAACCGTCCGATACAGTGTCATCGTCGCGGCAATGCGGCGGCGAACTGGCGAGGATTTTCGACGAATTGCCGAAAGCAAGTATAGTTTCCGTTTCGCGACCAGAAACCGCTGAAATAATTCCAATTCTACTTTCTTATACCATTGAATTGCAGTATAAACAGTTCAAATGGCGTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGGACAGGTTAAAGAATGGCTTCATAGCTTAGGAATAGTAGATCAAACAGTAATGGTGCAAGATGATGAAGAACCTGATGAGGGATCTGTACCTACACATCAGGAAGACAGTGTCAGTAACAGATATGTCCCATCTGTTGCTGCTCTATCGATAATCCGTCCATCGCTAGGAGGTCAGCAGTCTGTTGCAGATAGAGCCAAAGTTGCAATGCAAAATTATGTAGATCTTTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAGGCTATCGTTTCTACAAGAGTATGGTCCAAAACTGAGAGAAGGATATGTAACGGTGAAACATTTGTCAAATGTGTTACTGGATTCAGATGTAACATGCTTTCCATGTCATTGGTTTCACTTTTGTGAGAACAATTGGAAGAAGGTATGGGCAGTTTTGAAGCCTGGGTTTTTGGCCTTGCTGGAGGATCCCTTCAACAACAAGCCACTGGATATAATTATGTTTGATATCCTTCCATCCTCAACTAGCAAGGGAGAGACCAAAATCTATTTAGCTGAACCTGTAAAGGAACGCAATCCCTTGCGTTACACATTTAAGGTTACTGGCGGAAACAGGAGCATATGCTTGAGAACTATCAGTAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTACGGAGGGGTGGTGTTCTCCTCATCGGTTTGGTTCATTTGCTCCTGTAAGAGGTTTGACTGTAGATGAAAGCCAAGCCCAATGGTATGTAGATGGACAAGCCGCATTTGAAGCAATTGCTTCTTCAATTCAGGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACATGAGGCGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGACTCATTACTGGAAGAAAAAGCTAAGCAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGTTTGTACAGTATGAGAAGACTTCTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCCGAGCATTTTGCTTCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTAATTATTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCTGAGCATCAAGTGGGTGATTGTCCCTCTGTAATATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGTGACGAATTGGATCGCCACAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTGTGGGGACCTGCATGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAGATTCCTCTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAGATTGACATTGATGATAAGAAGGATGAAGATGACGAGAAAGAAATTGAAAGGCGGGATTCATTCTCCGCACAGTCTCCATTGCAAGATATACCACTACTTTTACCTCAAGAAGCTGACGGAGCAGTTACTTCGAGTGAAGATGATAGAAATTCCAGCGAAAGTTCTCCATTATTGTCCCAAAATCTGAACGGTGAAACTTTAGTTTCAGATGACCAGAAGAAAGGGCTTCAAGATGAAGCTGTTGCTTTTAACTTAGAGGATCAATGCATTGTTGATGCTGTAGATGATTGGTGGGAAACACCAGAAGGTACTAATGATGCCACTACTTCGGAATATGGACAAGTTGGTCCACGTACTTCCTGTCACTGTCAGATAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAACCTGAAGAAAGTATTCACACTGCATATTGTTCTCTTATTGAAAAGGCGAAGCATTTTATTTACATAGAGAACCAATTTTTCATATCAGGTCTAGCAATGGATGACACGATACAAAACCGTGTTTTGGAAGCAATATACAGGCGTATTTTGCAAGCCCACAAAGAACAGGAAGATTTTAGGGTTATAATTGTGTTGCCCCTCTTGCCTGGATTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAAGCACTCCATATTACACAATCTGGAAGCTATACTTGGTCGTAAGACACATGATTATATTTCTTTTTATGGTCTAAGATCTCATGGTAGACTTTACCCAGATGGTCCTATGGCAACATGTCAGGTATATGTACACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATAGGATCGTCTAATATAAATGACCGGAGCTTGCTTGGATCAAGAGACTCTGAGATCGGAGTGGTTATAGAAGACAAAGAATATGTTGAATCACTGATGAACGGAAAGCCGTGGAAGGCTGGTAAATTTTCCCACAGTCTCCGATGTTCCCTATGGTCTGAGCATCTTGGTCTTCATACCGGCGAGATTAATAAAATTACTGATCCAGTTTCTGATTCAACTTACAAGGATTTGTGGTTAGCTACTGCAAAGGAAAATACTAGAATCTACCATGAAGTCTTTGCTTGCATTCCCAATGATCAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGCACACTGGAAGGAAAAACTTGGCCAAACAATCATTGATTTAGGAATAGCCCCTGAGAAATTAATCTGTCATGAGAATGGAGAAAGAAAAGTAATAGAGCCAACAGATAGATTGAAGTGTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGCGAGGAAGATTTAAGACCAGCTGTTATTGAGAGTGAGTTTTATGTAGCTCCTCAAGTATATCATTAA 3222 0.4122 MSTDPLLQPSDTVSSSRQCGGELARIFDELPKASIVSVSRPETAEIIPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQGQVKEWLHSLGIVDQTVMVQDDEEPDEGSVPTHQEDSVSNRYVPSVAALSIIRPSLGGQQSVADRAKVAMQNYVDLFLGNLEIVNSREVCKFLEVSRLSFLQEYGPKLREGYVTVKHLSNVLLDSDVTCFPCHWFHFCENNWKKVWAVLKPGFLALLEDPFNNKPLDIIMFDILPSSTSKGETKIYLAEPVKERNPLRYTFKVTGGNRSICLRTISSAKVKTWVTAINEAGLRPTEGWCSPHRFGSFAPVRGLTVDESQAQWYVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYMRRPFDSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPEHFASRVYLWSHHEKLVIIDYKVCFLGGLDLCFGRYDTPEHQVGDCPSVIWPGKDYYNPRESEPNSWEDTMSDELDRHKYPRMPWHDVHCALWGPACRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEIDIDDKKDEDDEKEIERRDSFSAQSPLQDIPLLLPQEADGAVTSSEDDRNSSESSPLLSQNLNGETLVSDDQKKGLQDEAVAFNLEDQCIVDAVDDWWETPEGTNDATTSEYGQVGPRTSCHCQIIRSVSQWSVGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAMDDTIQNRVLEAIYRRILQAHKEQEDFRVIIVLPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAILGRKTHDYISFYGLRSHGRLYPDGPMATCQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHTGEINKITDPVSDSTYKDLWLATAKENTRIYHEVFACIPNDQIHSRAALRQSMAHWKEKLGQTIIDLGIAPEKLICHENGERKVIEPTDRLKCIKGHLVSFPLDFMREEDLRPAVIESEFYVAPQVYH* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1407 1073 Gene3D Endonuclease Chain A 694 932 - -
Tpr1g1407 1073 SMART pld_4 869 896 IPR001736 GO:0003824
Tpr1g1407 1073 SMART pld_4 460 487 IPR001736 GO:0003824
Tpr1g1407 1073 Gene3D Endonuclease Chain A 345 584 - -
Tpr1g1407 1073 SUPERFAMILY PH domain-like 233 326 - -
Tpr1g1407 1073 SUPERFAMILY Phospholipase D/nuclease 324 580 - -
Tpr1g1407 1073 SUPERFAMILY Phospholipase D/nuclease 708 919 - -
Tpr1g1407 1073 PIRSF PLD_euk 500 1073 IPR016555 GO:0004630|GO:0006654|GO:0048017
Tpr1g1407 1073 PIRSF PLD_euk 14 505 IPR016555 GO:0004630|GO:0006654|GO:0048017
Tpr1g1407 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 460 487 IPR001736 GO:0003824
Tpr1g1407 1073 MobiDBLite consensus disorder prediction 590 614 - -
Tpr1g1407 1073 Gene3D - 201 326 IPR011993 -
Tpr1g1407 1073 PANTHER PHOSPHOLIPASE D ZETA 2 17 1070 - -
Tpr1g1407 1073 Pfam PLD-like domain 742 916 IPR025202 -
Tpr1g1407 1073 MobiDBLite consensus disorder prediction 590 658 - -
Tpr1g1407 1073 CDD PLDc_vPLD1_2_yPLD_like_1 353 498 - -
Tpr1g1407 1073 SMART PH_update 200 327 IPR001849 -
Tpr1g1407 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 869 896 IPR001736 GO:0003824
Tpr1g1407 1073 Pfam Phospholipase D Active site motif 460 487 IPR001736 GO:0003824
Tpr1g1407 1073 Pfam PH domain 228 323 IPR001849 -
Tpr1g1407 1073 PANTHER PHOSPHOLIPASE D 17 1070 IPR015679 -
Tpr1g1407 1073 CDD PH_PLD 177 323 - -
Tpr1g1407 1073 CDD PLDc_vPLD1_2_yPLD_like_2 729 913 - -
Tpr1g1407 1073 ProSiteProfiles PH domain profile. 199 325 IPR001849 -
Tpr1g1407 1073 MobiDBLite consensus disorder prediction 639 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1407 Tpr-Chr1 12872889 12883163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1407 25 1073 Phospholipase D Gene Family (Wang group) AT3G05630 66.446 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1407 K01115 - gmx:100796914 1839.7