Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1406 ATGGAGAAAAAGTTGAGAAAAGGACCATGGTCAAAACAAGAGGATGCAATATTAATTAAATATGTTGAAAGATATGGACCGAAAAAGTGGAATTTATTACAAAGGGTAACTGGACTTCCTCGAGAAGGCAAAAGTTGTCGTCTAAGATGGCTTAATCATCTTAATCCATATTTGAAAAAGGGAAAATTAAGTGAAGAAGAAAAACAGAAAATCATTCAACTTCGTCAACTTGGAATTAATTGGTGTGAAATTGTTAAACAGACTCCTGGAAGAACAGATAATGAGATAAAGAATTTTTACCATATTAATAAGAGAAAGAAACTTAAATTGGAGAATAGCAATGGAGAATGTCAGAAAAAGAAAAAGAAAATAAATGTGGCAAGTACTTCAACAAAGAATAATGTGGCAAGTACTTCTACAAAGAATAATTCTTCCCCAACAATCATTGACAGAATACAAGATGTTCACTGGATGAATGAGTTGAATAACAATGGAGAAAGTAGCAACCAGCAACAAGGCATTTCTGACACACATGAAATGGAAATCATGAAAGACTCCTTCCATATTCCAATTATGCAACCTTCAAATATGCTTTGCAATAATGTGCCAAGTACTTCTACAATCAATAATTCTCCCCCAACAATCATTGATAGGGGTGAAGCTCCTTTTATGCCAACTAACATGGTATCAAATGTGCCTCTATTTATAGAGTATCAAACTTTTGAATCTCCACATCATCCGCACACTTCTACAAGTGATAAACCTTCCCTAACATTTATTGATAGGAGTGAAACTTCTTTTATTTCTAAGGATATGGAATCAAACCTGCCTCTACTCCCAGAAAGTATGAACTTTGAATCTTTTGAATCTCTAATTCAAAAGTATCCTCCACTCCCACTTCGATCATCTGAGGAGATTCAACGAGAGCAGCTGGAACTAGATTCTCCATTCAACAATAATTTGATGGAATCCATGTTCAATACATCAAATATTTTGGATGACTCTAATGGTAACCTATATTTCTGTGAGACAAGATTGGTTGATGAAAATGGAAATGAGCCAACATATTTGAAGAAAGATGAATCAAACTGTGAGACAAGATTGATTGATGAAAATGGGATGAAGCCAACATATTTGAAGAAAGATGAATCAAACAATGAAGACTTGATAGATTTGTTGGATAGCTTAGGTTGGTTCGATGGTTATATTTTTTGA 1215 0.3391 MEKKLRKGPWSKQEDAILIKYVERYGPKKWNLLQRVTGLPREGKSCRLRWLNHLNPYLKKGKLSEEEKQKIIQLRQLGINWCEIVKQTPGRTDNEIKNFYHINKRKKLKLENSNGECQKKKKKINVASTSTKNNVASTSTKNNSSPTIIDRIQDVHWMNELNNNGESSNQQQGISDTHEMEIMKDSFHIPIMQPSNMLCNNVPSTSTINNSPPTIIDRGEAPFMPTNMVSNVPLFIEYQTFESPHHPHTSTSDKPSLTFIDRSETSFISKDMESNLPLLPESMNFESFESLIQKYPPLPLRSSEEIQREQLELDSPFNNNLMESMFNTSNILDDSNGNLYFCETRLVDENGNEPTYLKKDESNCETRLIDENGMKPTYLKKDESNNEDLIDLLDSLGWFDGYIF* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1406 404 CDD SANT 64 104 IPR001005 -
Tpr1g1406 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 58 IPR017930 -
Tpr1g1406 404 ProSiteProfiles Myb-like domain profile. 55 101 IPR001005 -
Tpr1g1406 404 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 3 381 - -
Tpr1g1406 404 Gene3D - 62 136 - -
Tpr1g1406 404 Pfam Myb-like DNA-binding domain 10 70 - -
Tpr1g1406 404 SMART sant 6 56 IPR001005 -
Tpr1g1406 404 SMART sant 59 106 IPR001005 -
Tpr1g1406 404 SUPERFAMILY Homeodomain-like 5 100 IPR009057 -
Tpr1g1406 404 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Tpr1g1406 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 108 IPR017930 -
Tpr1g1406 404 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 381 - -
Tpr1g1406 404 CDD SANT 9 54 IPR001005 -
Tpr1g1406 404 Gene3D - 7 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1406 Tpr-Chr1 12869482 12872324 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1406 2 150 MYB Transcription Factor Family AT3G01530 42.000 9.83e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g1406 Myb_DNA-bind_6 3.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1406 K09422 - mtr:MTR_1g083630 142.895