Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1405 ATGGGAATTAGTATTGTTTCTGCCATGGGAGCTTGTTTGCGCAACCACGTCAAGGCTGAGAGCCCAATGGCCCCAATCAATTCTGTTTCAGGGTTAAGTTCAAAGAGTGTGAATGTCAGTACAGAAGATATCAGTAGACCATGTTGTAAGGTTCCTGATGATCTCAGTAGCTCAAGTAATATTGGAGTACCAGTGGAATCGGTACCGGTCCCTCGGACTGCTCGTGGTGTGGAGGAGATCTTGCAACCGTCCAATTTGAAGTGCTTTACTTCTACAGAAATTCGGGCTGCAACCAGAAATTTTCATGTAGACAGTGTGTTAGGAGATGATAGTATTGGATCAGTTTTTAAGGGTTGGATTGATGAACACTCAACTTCTGCTGCCAAACCTGGCAAAGGCATTGTTGTTGCTGTCAAAAGACTTAATCATGATGGCTTCAAAGGTCATAAGGATTTGTTGGCTGAAGCCAACTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAATTGATTGGATATTGCATTGAAGATGAAAACAGCTTTATGGTCTATGAATTTATGCCACGTGGCAGCTTGGAGAATCACTTGTTCATAAGAGGCTCATATTTTCAACATCTTTCTTGGAACCTCCGTTTGAAGGTTGCTTTTGGTGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTAAAACAAAAGCGACATACCGCGATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGGGCGGGACTGCGGTTGATAAAAGTAGGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCCACTGGTAATCACAGTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTATTGGAAATATTATCAGGAAGGAGAGTTGTTGACAAGAATAGACCACAAAGACAACACAATTTGGTGGAATGGGCTAAGCCTTATCTATCCAACAAGCGCAAGATTTTGCGCGTGTTGGATAATCGTCTTGAAGGCCAATATGAATTAGAAGATGTGTATAAGGTTGCTATACTCTCCCTACGGTGCCTTTCAATTGAAGCCAAGTTGAGACCAAAAATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTAATGTAAACGGATGCAATCAGAATCGTTTGCGTAGAAGAAGTACCGATGATGTTCCCCGTGTTAGAACAGCCGCAGCTTATCCCCAACGCTCTACTTCTATGCTTTGTACATGA 1263 0.4228 MGISIVSAMGACLRNHVKAESPMAPINSVSGLSSKSVNVSTEDISRPCCKVPDDLSSSSNIGVPVESVPVPRTARGVEEILQPSNLKCFTSTEIRAATRNFHVDSVLGDDSIGSVFKGWIDEHSTSAAKPGKGIVVAVKRLNHDGFKGHKDLLAEANYLGQLSHPHLVKLIGYCIEDENSFMVYEFMPRGSLENHLFIRGSYFQHLSWNLRLKVAFGAAKGLAFLHSAKTKATYRDFKTSNVLLDSNYNAKLSNFGLAKGGTAVDKSRLTYGYAAPEYLATGNHSAKSDVYSFGVVLLEILSGRRVVDKNRPQRQHNLVEWAKPYLSNKRKILRVLDNRLEGQYELEDVYKVAILSLRCLSIEAKLRPKMDEVVTNLEQLQVPNVNGCNQNRLRRRSTDDVPRVRTAAAYPQRSTSMLCT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1405 420 Gene3D Phosphorylase Kinase; domain 1 77 186 - -
Tpr1g1405 420 PANTHER OS01G0588500 PROTEIN-RELATED 62 399 - -
Tpr1g1405 420 SUPERFAMILY Protein kinase-like (PK-like) 82 382 IPR011009 -
Tpr1g1405 420 ProSiteProfiles Protein kinase domain profile. 101 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1405 420 Pfam Protein tyrosine and serine/threonine kinase 102 377 IPR001245 GO:0004672|GO:0006468
Tpr1g1405 420 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 62 399 - -
Tpr1g1405 420 Gene3D Transferase(Phosphotransferase) domain 1 187 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1405 Tpr-Chr1 12863341 12866346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1405 87 377 Glycoside Hydrolase AT3G07070 42.617 4.73e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr1g1405 PK_Tyr_Ser-Thr 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1405 - - mtr:MTR_4g063930 634.409