Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1398 ATGAGTAAGACTGAATTATCAACGATGAAGCAACCACCTGTTCCGTTGGCAACACTGATCGGGCGTGAGCTACGGAATAGAAAAACAGAGAAGCCTTTTGTGAAGTATGGACAGGCTGGTTTGGCAAAGAAAGGCGAAGATTATTTTCTAATCAAGACAGATTGTCAGAGGGTTCCCGGGGATTCTTCAACGCTGTTTTCTGTCTTTGCGATCCTTGACGGGCATAATGGTATATCTGCTGCTATTTTTGCGAAGGAAAACATACTAAACAATGTCATGAGTGCAATACCGCAAGGTATAAGCAGGGAGGAATGGCTTCAAGCTCTGCCTCGGGCTCTAGTTGTCGCTTTCGTCAAAACTGATATGGAATTTCAGAAAAAAGGAGAAACATCTGGAACAACAGCTACATTTGTTATTATCGATGAATGGACTGTTACGGTTGCATCTGTTGGAGATTCCCGATGCATATTAGATGCCCAGGGTGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAGAATGTAGAAGAGAGGGAACGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTGGGGCCACTTCGCTGCTGGCCCGGTGGATTGTGCCTTTCTAGATCGATAGGCGACACAGATGTTGGAGAATATATCGTCCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGGCTTATCATAGCTTCCGATGGTATTTGGGATACTTTGTCTTCTGATATGGCTGCCAAGTCGTGTCGTGGTGTACCTGCAGAACTTGCTGCAAAGCTGGTGGTTAAGGAAGCTCTAAGGTCAAGAGGACTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTACCCTATGTCGCCAATGGCAACAATTGCTAGAAAGAAACAGAATATGCTAAGTTCACTTCTCTTTGGAAAGAAATCTCCAAACTCTACAAATAAAGGAACTAATAAGCTTTCTGCAGTTGGGGTTGTGGAAGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAACGATGTTCCTTCCAATACAAATTCTGGTATTTACCGCTGTGCGGTTTGCCTAGCAGATCAACCCTCTGGTGATGGTTTATCAGTCAACACCGATCATTTTATCACTCAAGTATCTAAACCACGAGAAGGTCTATTCCTCTGCGCAAACTGTCAGAAGAAAAAAGATGCCATGGAAGGAAAAAGGTCTTGA 1272 0.4379 MSKTELSTMKQPPVPLATLIGRELRNRKTEKPFVKYGQAGLAKKGEDYFLIKTDCQRVPGDSSTLFSVFAILDGHNGISAAIFAKENILNNVMSAIPQGISREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDEWTVTVASVGDSRCILDAQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDMAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPMSPMATIARKKQNMLSSLLFGKKSPNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGNDVPSNTNSGIYRCAVCLADQPSGDGLSVNTDHFITQVSKPREGLFLCANCQKKKDAMEGKRS* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1398 423 Gene3D - 33 301 IPR036457 -
Tpr1g1398 423 Pfam Protein phosphatase 2C 63 281 IPR001932 -
Tpr1g1398 423 PANTHER ALPHABET, ISOFORM E-RELATED 2 423 - -
Tpr1g1398 423 CDD PP2Cc 43 297 IPR001932 -
Tpr1g1398 423 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 423 - -
Tpr1g1398 423 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Tpr1g1398 423 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Tpr1g1398 423 SMART PP2C_4 23 295 IPR001932 -
Tpr1g1398 423 SMART PP2C_SIG_2 50 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1398 Tpr-Chr1 12792327 12795838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1398 1 422 PP2C-type Phosphatase Gene Family AT1G09160 74.171 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1398 - - gmx:100791944 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1398 1 12792327 12795838 Tpr1g1398 1 12792327 12795838 ECH