Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1389 ATGGAAAAGGGAAGCAGTAGCAGAAGAAAGAACAACAACAACAACAAGCAGCAGCAACAGCAACACGATTTAGAGTTAGAAAAAGTTCGTTTAATCAGTTTAGCTCTTGAATTCGGCTACGATGAACACTCCGCAATCCAATGTTTCGATCGTCTTGTGGATCTCTACGGTGATGATGGTCGTGATTTTATCACCGTTGAACATTGCGGCGATGATTTTCTTGTTGCGTTGGCGGAATCAGTACAAGACACGGAGGAATGGGATGATTTACGCGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACGTGCGGTGATGCTTCTAGAAGTTTTGTTGATATTGTTGACGATTCACCTCAGAAATGCCGAACCAAGTTTGTGGAGTTGGGTTCAAGTGATGATGAAGGTGCAGATTTTAATGTTTCTAGGGTTCAACATCCTCCAAACTCCGCGGATTGCAGAAGTGGCATCACTCCAGGCTCGGTTTCATCAACTTCCAGAAAAAAACAGTCCTCCTTTGCTTCAAAGGAAAGAAATAGTACTCTCACTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGCAAATGTCGTTATCTTTGGTAATAAGACATTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCTAAACAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCGGCAACCCTTCAACCAGGAGTTACAGTAGTTGTGTCTCCCTTACTTTCACTTATTCAGGATCAGATAATAACACTTAACTTGAAGTTTGGAATCCCTGCTACATTTTTAAATTCTCAACAAACTGCTTCACAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTCCTGTATGTGACACCTGAGAGAATCGCCGGAAACCAATCATTTATTGGCATTCTAAAATGCATGCATCAGAAGGGACAACTAGCAGGTTTTATTGTTGACGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGTGGATTAGGATCTCTTAAGCAACATTTTCCGCATGTACCTGTCATGGCATTGACTGCCACTGCAACACACCCAGTTCGCAAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGTTAAGACAAAGGAACCACTGAAGCAGCTTGGACAACTACTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGCGTTGAGGTATCAAAATTCTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCCGGCTTGGCTGCCCGCCAGAGAGTTGCCGTTCAAAAGAAATGGCATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAGCCTGATGTTCGATTTGTCGTCCACAACACGATGTCAAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCCGTATGCATTGCTCTATACCAGAAGAAAGATTTTAGTAGAGTAGTATGCATGATAAGAAACGGCCAAGTATATAAGAAGGACAGTTTTAAGACAGCAATGGCTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAAACCTTACTCAAACACTTCGGAGAATCTTTCGATAGAAAGTCTTGCAAGAATGGCTCTAGCCCTTGTGATAATTGTCTTAAGACTGCATTGTGA 1848 0.4156 MEKGSSSRRKNNNNNKQQQQQHDLELEKVRLISLALEFGYDEHSAIQCFDRLVDLYGDDGRDFITVEHCGDDFLVALAESVQDTEEWDDLREMESQAVGTLNHVLDEGLATCGDASRSFVDIVDDSPQKCRTKFVELGSSDDEGADFNVSRVQHPPNSADCRSGITPGSVSSTSRKKQSSFASKERNSTLTYEELKALDDIELANVVIFGNKTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFIVDEAHCVSQWGHDFRPDYRGLGSLKQHFPHVPVMALTATATHPVRKDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVVHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQVYKKDSFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFDRKSCKNGSSPCDNCLKTAL* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1389 615 Pfam RecQ zinc-binding 542 611 IPR032284 -
Tpr1g1389 615 Gene3D - 406 614 IPR027417 -
Tpr1g1389 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 551 IPR027417 -
Tpr1g1389 615 Gene3D - 171 405 IPR027417 -
Tpr1g1389 615 CDD DEXHc_RecQ 208 405 - -
Tpr1g1389 615 Pfam DEAD/DEAH box helicase 216 385 IPR011545 GO:0003676|GO:0005524
Tpr1g1389 615 MobiDBLite consensus disorder prediction 155 183 - -
Tpr1g1389 615 CDD SF2_C_RecQ 406 539 - -
Tpr1g1389 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 398 IPR014001 -
Tpr1g1389 615 SMART helicmild6 448 530 IPR001650 -
Tpr1g1389 615 PANTHER BLOOM SYNDROME PROTEIN 44 613 - -
Tpr1g1389 615 PANTHER DNA HELICASE RECQ FAMILY MEMBER 44 613 - -
Tpr1g1389 615 Pfam Helicase conserved C-terminal domain 423 529 IPR001650 -
Tpr1g1389 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 572 IPR001650 -
Tpr1g1389 615 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 208 613 IPR004589 GO:0004386|GO:0006310
Tpr1g1389 615 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 337 346 IPR002464 -
Tpr1g1389 615 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1389 615 SMART ultradead3 210 414 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1389 Tpr-Chr1 12707752 12713747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1389 339 528 Eukaryotic Initiation Factors Gene Family AT5G11170 25.641 5.81e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1389 K10899 - gmx:100806070 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1389 1 12707752 12713747 Tpr1g1389 1 12707752 12713747 ECH