Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1388 ATGATAATGAAGAAAAGACATTCCAAGGGAAGTTTCCTCAGCTTCTTTGATTGGAATGAAAAATCTCAAAAGAAGCGATTTTGTGACAATCCTAATTTACCTGATGTTTCAAACCAAGCAAAGGAAAACATGAAAATCATGCCAATGTCACAGATAGATGAGAATGGAGAAAAAACTACTAATATTGCAAGTAGTGATGAAGAATGTGGGACTAATAAATCCATAGGGCTAGTAGCCAGACTCATGGGTTTGGATTCACTTCCTGATGTTCCAACTGTCTCTCTTGAAACTTCTCAGTTTCATGAGATTGTTCTTCATTCAAAGCCGGACTATTGCAATGTAGATCCCACAAACACCGCACTTAAGTCGAACAAGTCTTTTTCGGGTGCCATTGAATCATCAACAATGAAGAAATTTCAAAATGAAACTTTGCATCTAAGGTCTGCTAAACCTATTTCAGTTACTTGCAATAAACTTTTGTCTCCCATCAAATGTCATGGTTATACGCAATCTAAGAATGTATCATATATAAAGGCGGAAGATGTTAAGAACATTGAGGTAAGTCCCCGGCCATATACGAGGAACAGAATGTCTTCAGTTGGATCTTTATCTGTTCCCTTGAGAACTCTTGATCCGGAAGAGAAGTTGAAAGTGGCGCCACGTGGATCAAAGTTGAACGTGAATGGAAAACCTACTGTTAGGAGCAGCAACTTATATAAGTCTAGTCCAACCGTCATAGGTTCAAGAGATTCAGAAAATAATAACTTGCGCCGAGGTAAAGGAAAATCTGATTCACTTGTAACGCCGTCCAAAACCAATGTTCAAAGTAGGGATATGTTGAATTTGAATGGAAATAGGAGATACATGAAGCAGAAAAATTGTCATGGCGAAAACATCAATGTTCTTAGGCAGAATGGTGTGACCAGCAAAGGTAAATCAACTTCAAAAGTGGACACTAATAAGCCAACACAAACTCGTTCTTCAGAAAGTTCGGCTGGAGCTAGGAAGACAACAAACAAATGTGCTGTTAATTCCAACATTGAGTCCAAAAGATCAAGCACAAGAGTAACTGATAAGCAAAAGGAGTTTTCGGTATCTAAAAGAAAGAGTTCTTCCCAAAAGAAAAGGTATGATCAGAATGATGCACGATGTTCTTATGAAAGCAAGTCCATAAAATGTAATGTTACAATTGATGAAAGTCTTCACCAAGATGCATTTAGCATGAAAGAAAGCAGGGATGTCATTTCATTTACATTTACATCTCCATTGAGGAAAAAAATGTCTGAGTCGCGATCAACTATTGAGCAAGCGATGAAAACAAGGACCATAATTGATGTCGATTCTTTTGATCATAGTGATAAGGTTTATCCCAAAAAATTATCATTATCTCATACCAAGTTAAATGTAATAGATGTTGATGCATTAAGTGTCATGTTATCTCACATTAACCCACCTCAATGTACCTCGGAAATAGAAGGGTGTTCTGTTGGTTTTAAACCTATTTCGGAAGACAGATTTAACAGCATGGTATGCAACTCATCAAGGGAACATGGCAATAGCTTTCACCTCTACAACATGGATGACAATTGTTGTTCTTCAAGTGATAATATGGTGCTTAACATGAATCAGCAACTTCAGATATTACCAACCGAATATCCGAGGTGTAGCAGCAATAGTGAAAGCGGAAATGGATCATGTTATCAGCATACAAGAACTCTTACTACTTTTCATGAAAATCATTTCACCAGTAAAACTTACTTGGATTGTGAAGATAGCACACATGGAGGCAGCACAGTTTATTCTTCCATGCAAGATGAAGAAGTATCTAGTTCTCAAATAAATGAATCTATATCACCTAACTACAAGAAGAATTGGTCTAAGAAAAGCTCTACAAGGATGATGGAACTTGAGTATGTAAAGGATATACTTAGCAATGCAGAATTGATGGAAGAAGAATTAATGGTAGGTGAGACAAACAATATAATAATGCCAACTCTCTTTGAGCTTTTGGAGAATAAAAAAACTGGTGTAAAAAGCTATGAAGAGTACTCTAAGCTTGAAAGGAAAGCTATATTTGACTGTGTAAGAGAGTTCTTAGAATTAAGATGTAGGCAAGTTTTTGTTTCATGGTACAAAGCATGGCCTAGATATGTGGAATCAGTTAGTATGAGGAAGAGGTGTTTAGCAGAAGAAGTGTATAAGGATATGTTGGAGATTAGAAGCATGGAAGAAGATGTAGTTGTGGATGAGATTGTTAGCAAGGACATGAACACTCCATTAGGTAGATGGCTTGACTTTGACATTGAAGTTTCTGAAAATGGCTTAGAACTTGAACTTGACATTGTAACATATTTGATAGATGAATTGGTTTATGATTTGTGGCTTGTTTAA 2391 0.3655 MIMKKRHSKGSFLSFFDWNEKSQKKRFCDNPNLPDVSNQAKENMKIMPMSQIDENGEKTTNIASSDEECGTNKSIGLVARLMGLDSLPDVPTVSLETSQFHEIVLHSKPDYCNVDPTNTALKSNKSFSGAIESSTMKKFQNETLHLRSAKPISVTCNKLLSPIKCHGYTQSKNVSYIKAEDVKNIEVSPRPYTRNRMSSVGSLSVPLRTLDPEEKLKVAPRGSKLNVNGKPTVRSSNLYKSSPTVIGSRDSENNNLRRGKGKSDSLVTPSKTNVQSRDMLNLNGNRRYMKQKNCHGENINVLRQNGVTSKGKSTSKVDTNKPTQTRSSESSAGARKTTNKCAVNSNIESKRSSTRVTDKQKEFSVSKRKSSSQKKRYDQNDARCSYESKSIKCNVTIDESLHQDAFSMKESRDVISFTFTSPLRKKMSESRSTIEQAMKTRTIIDVDSFDHSDKVYPKKLSLSHTKLNVIDVDALSVMLSHINPPQCTSEIEGCSVGFKPISEDRFNSMVCNSSREHGNSFHLYNMDDNCCSSSDNMVLNMNQQLQILPTEYPRCSSNSESGNGSCYQHTRTLTTFHENHFTSKTYLDCEDSTHGGSTVYSSMQDEEVSSSQINESISPNYKKNWSKKSSTRMMELEYVKDILSNAELMEEELMVGETNNIIMPTLFELLENKKTGVKSYEEYSKLERKAIFDCVREFLELRCRQVFVSWYKAWPRYVESVSMRKRCLAEEVYKDMLEIRSMEEDVVVDEIVSKDMNTPLGRWLDFDIEVSENGLELELDIVTYLIDELVYDLWLV* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1388 796 MobiDBLite consensus disorder prediction 297 351 - -
Tpr1g1388 796 MobiDBLite consensus disorder prediction 228 252 - -
Tpr1g1388 796 Pfam DUF761-associated sequence motif 76 89 IPR032795 -
Tpr1g1388 796 MobiDBLite consensus disorder prediction 214 276 - -
Tpr1g1388 796 MobiDBLite consensus disorder prediction 352 381 - -
Tpr1g1388 796 MobiDBLite consensus disorder prediction 291 381 - -
Tpr1g1388 796 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 632 796 - -
Tpr1g1388 796 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 291 634 - -
Tpr1g1388 796 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 293 - -
Tpr1g1388 796 Pfam Domain of unknown function (DUF4378) 635 788 IPR025486 -
Tpr1g1388 796 PANTHER DUF4378 DOMAIN PROTEIN 632 796 - -
Tpr1g1388 796 PANTHER DUF4378 DOMAIN PROTEIN 291 634 - -
Tpr1g1388 796 PANTHER DUF4378 DOMAIN PROTEIN 1 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1388 Tpr-Chr1 12701290 12705616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1388 2 793 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 28.938 7.14e-61 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1388 - - mtr:MTR_1g083850 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1388 1 12701290 12705616 Tpr1g1388 1 12701290 12705616 ECH
Tpr6g0333 6 2704609 2707323 Tpr1g1388 1 12701290 12705616 PCT