Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1374 ATGGATTTAATTGGGTCGGATATATCAGATCGGATTCTCAAGAACCAGATCGCCACTCATCCCCTCTATCCAAATCTACTATCTGCTTTTATAGAATGCCAAAAGGTTGGGGTACCATCAGAAGTTGCATCCCTTCTTGAAGAAATAGGGCGTGAAAGCCACCACAACAATGCTCTCCGTCAGATTGGAGATGATCCTGACCTTGACCACTTTATGGAATCATACTGCGAAATTCTTCATAGATACAAAGAGGAATTGTCGAAGCCATTCAATGAAGCGACATTGTTTTTGTGTAAGATTGAATCACAACTAAGCCAACTCTGCAATGACACACAACAACAAGGAATGTCATCTGATTATAACAACCGTTCAGATGAGGCAGCAGGGACATCAGAGGATGAATTGAGTTGTGAAAGGGTTGAAGCAGTAGAAGGTCATCATGAAATTTGTGGCACATCATGTCAAGGTGATAAAGAGCTTAAAGAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGCAACTTGAGAAAAGAATTTCTAAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCTAGAAAAACATTGATGGATTGGTGGAATGTTCACTATAGGTGGCCTTATCCCACGGAGGAGGAGAAATTGCAACTATCAGAAAATACTGGACTTGATATAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGACATTGGAAACCATCCGAAGATATGAGATTCGCGATTATGGAGGGTGTAAGTAGCACCGGCATAACAAGACCTCTTTAA 792 0.399 MDLIGSDISDRILKNQIATHPLYPNLLSAFIECQKVGVPSEVASLLEEIGRESHHNNALRQIGDDPDLDHFMESYCEILHRYKEELSKPFNEATLFLCKIESQLSQLCNDTQQQGMSSDYNNRSDEAAGTSEDELSCERVEAVEGHHEICGTSCQGDKELKEMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARKTLMDWWNVHYRWPYPTEEEKLQLSENTGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGVSSTGITRPL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1374 263 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 253 - -
Tpr1g1374 263 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 11 253 - -
Tpr1g1374 263 MobiDBLite consensus disorder prediction 111 134 - -
Tpr1g1374 263 ProSitePatterns 'Homeobox' domain signature. 217 240 IPR017970 GO:0000981|GO:0006355
Tpr1g1374 263 Pfam ELK domain 159 180 IPR005539 GO:0003677
Tpr1g1374 263 SMART KNOX1_2 11 55 IPR005540 GO:0003677|GO:0005634
Tpr1g1374 263 Pfam KNOX1 domain 13 54 IPR005540 GO:0003677|GO:0005634
Tpr1g1374 263 SMART KNOX2_2 58 109 IPR005541 GO:0003677|GO:0005634
Tpr1g1374 263 MobiDBLite consensus disorder prediction 111 125 - -
Tpr1g1374 263 ProSiteProfiles 'Homeobox' domain profile. 179 242 IPR001356 GO:0003677
Tpr1g1374 263 SUPERFAMILY Homeodomain-like 181 251 IPR009057 -
Tpr1g1374 263 SMART HOX_1 181 246 IPR001356 GO:0003677
Tpr1g1374 263 Pfam KNOX2 domain 61 108 IPR005541 GO:0003677|GO:0005634
Tpr1g1374 263 SMART ELK_2 159 180 IPR005539 GO:0003677
Tpr1g1374 263 ProSiteProfiles ELK domain profile. 159 179 IPR005539 GO:0003677
Tpr1g1374 263 Pfam Homeobox KN domain 199 238 IPR008422 GO:0003677|GO:0006355
Tpr1g1374 263 CDD homeodomain 191 243 IPR001356 GO:0003677
Tpr1g1374 263 Gene3D - 177 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1374 Tpr-Chr1 12566374 12572259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1374 7 260 Homeobox Transcription Factor Family AT1G23380 50.566 2.06e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr1g1374 KNOX2 4.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1374 - - gmx:100786114 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1374 1 12566374 12572259 Tpr1g1374 1 12566374 12572259 ECH