Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1372 ATGGATTTTCAGGGATTCTTAAACGACTTGCAAGATTGGGAACTTTCTACCAAGGATAAAGCGACTAAAACCAAGTTACAAAAGGAAAATAAATTCACGAAGGGTTCATCTGCTCTGAGTGATGGATCAGTGGGTGTGGAAAATGGATCAAGAGGGGATACTATTTCTTTTGATCATGTGAGAAAAACCTCAGCTAAGTATGATTTCTCAAGAAATAGTGACGTGCTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGTTACTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCCTATGCAAATAGGGCAATGGCCCGTATAAAGCTAAGAAGATTTCAAGAAGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGTTACATAAAAGCATACTCTCGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAACAATCCATGGAGGATGCCGAATTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAGTCACTGTACGAGAAAGAAATTGTACATAAAGCATCTACAGCACTAAGAAACACTGTAGAAAAAGTGGGAAAGTCCAAGACAAAAGTTAATGGGAACAGCAGCATCAACTCTGTTTCAAATGTTAATCAAAAGTCGGGGCCAACTGAAGCTCATCATCAAACAAAGAGTAATGAGCAGAAAATTCCTGTTAAAGAATCACTCTTATTGGAGGAGATCAATAATAAGGATACAAAATCCGGAAGCAGGACCCAAGGACAAGTAGGCAATGGTTCTAAGGAAGGTTATAATGCAAGCAACAGCTTGGAACAGAGAAATCACAAAACTAGAAAGCCGGAAATGAAAGCATCTGTTGAACAACTTGCATCTCGAGCTGCTTCTCGAGCCATGGCTGAAGCTGCAAAAAACATAACACCGCCAACTACAGCTTATCAGTTTGAGCTCTCTTGGAGGGGGTTTTCAGGTGATCGTGCTTTGCAGGCTTGTCTGCTAAAGGCAATGTCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTAATTGAGATAATCAAGTGTGTTGCATCCTTTTTCACTGAAGACATGGACCTAGTTGTCAGTTATTTGGATAATTTAACCAAGGTACCTAGATTTGATGTGATCGCAATGTGCCTTCCAGCAGCAGCTAAGGAAGATTTGCGCAAGATCTGGAATGAAGTGTTTTGTAGTGAAGCAACTTCGATGGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAATTCTACCTTGGATAG 1392 0.4088 MDFQGFLNDLQDWELSTKDKATKTKLQKENKFTKGSSALSDGSVGVENGSRGDTISFDHVRKTSAKYDFSRNSDVLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMARIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKQSMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEIVHKASTALRNTVEKVGKSKTKVNGNSSINSVSNVNQKSGPTEAHHQTKSNEQKIPVKESLLLEEINNKDTKSGSRTQGQVGNGSKEGYNASNSLEQRNHKTRKPEMKASVEQLASRAASRAMAEAAKNITPPTTAYQFELSWRGFSGDRALQACLLKAMSPHELPKIFKNALSSTLLIEIIKCVASFFTEDMDLVVSYLDNLTKVPRFDVIAMCLPAAAKEDLRKIWNEVFCSEATSMEYAEILDNLRSKFYLG* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1372 463 Pfam Potential Monad-binding region of RPAP3 340 429 IPR025986 -
Tpr1g1372 463 MobiDBLite consensus disorder prediction 280 304 - -
Tpr1g1372 463 SMART tpr_5 125 157 IPR019734 GO:0005515
Tpr1g1372 463 SMART tpr_5 158 191 IPR019734 GO:0005515
Tpr1g1372 463 SMART tpr_5 91 124 IPR019734 GO:0005515
Tpr1g1372 463 PANTHER OS05G0129900 PROTEIN 1 462 - -
Tpr1g1372 463 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Tpr1g1372 463 Gene3D Tetratricopeptide repeat domain 79 189 IPR011990 GO:0005515
Tpr1g1372 463 MobiDBLite consensus disorder prediction 224 252 - -
Tpr1g1372 463 MobiDBLite consensus disorder prediction 224 316 - -
Tpr1g1372 463 SUPERFAMILY TPR-like 90 205 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1372 95 161 U-box Gene Family AT3G07370 39.706 6.18e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1372 K23002 - gmx:100784528 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1372 1 12541408 12548223 Tpr1g1372 1 12541408 12548223 ECH