Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1369 ATGGAATGCAAGACTATGGTTCCATCACTGTCAGATACAAAACTCACCACTGTTGTTCTCTCCAACGGGAAACACTACTCTTCTCCTGATGACCTAGAGACCTTCTACATCAAACTCACTGACTTGTTAGACGACTCTGGGTTTACTCTCATTTTCAATGCCCGAGAAACATCCTTAGACCTGTACCTGTTTTACTTGGAGGTCACTAGAAGAGGAGGTTATCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTCAGCACTAAAACTGGAAGGCAACAACGTCAAGTTATGTACTCAAGTTGAAAAGCTCTATGCACTTCTTTTATACAAATTCGAGAAATTGTACTTTTACAGGTTTCCTGCAACTCAAGCTGCAACTAGCAGCACCAAAGTTAAAAGTAAGGAGAACTCGGCCACTAGTTTATCTCAATTAATGGATGATGGAGATTATCTGACGGCGGCAAGGCTGTCCAAGGACTACCCTATCAAAAAATTGCCAGCATTACCTCCTGTTACTCATCCGGAAATACCCCCTCCGGTGGTTCTACAAACACCCTCAAAAGACAAAGAAACGAAGAAACGGCGAGGTGCTCCAACGGGGAGAAGTGGATATCAAATATTTCTCAAGCAAGAATGTGCTCGATTAAAAGCTTGTTGTCCAGACATAGATGGGAAAACAGTCCTACGCACGGCTGTTGAAGCGTGGAACAAGATGTCTGACAATGATAAGCAGCCATATGTGGAAGAAAGCAAGAAGATAAAGGAACAAAATAAGCAAGCAAATATGATCATTGGCAATAACCAGAAGGAACAAAATAAGGAAGCAATGATCATTGACAATAAGAAGAAGAAGAAGAAGAATAGCACTGAAGATCTTAAAAGCGACGAGAAGAGGCCTAATGTGTCTAGTGACCACTACTGTGTAACTTCGCAACCTCTACCAAATCACTCTTTTGTCAACAATCCAGCAGTAGACTTGGCTCTTAACATGACAGAAAAAACATCTAAGGATCCCATCTTCCCGGTTGATTTGGATGCTTATCGTTCCGTAGATTTGCCATATGAGGTTTTTATGTAA 1086 0.4153 MECKTMVPSLSDTKLTTVVLSNGKHYSSPDDLETFYIKLTDLLDDSGFTLIFNARETSLDLYLFYLEVTRRGGYHQVGQQKKWGEVVSALKLEGNNVKLCTQVEKLYALLLYKFEKLYFYRFPATQAATSSTKVKSKENSATSLSQLMDDGDYLTAARLSKDYPIKKLPALPPVTHPEIPPPVVLQTPSKDKETKKRRGAPTGRSGYQIFLKQECARLKACCPDIDGKTVLRTAVEAWNKMSDNDKQPYVEESKKIKEQNKQANMIIGNNQKEQNKEAMIIDNKKKKKKNSTEDLKSDEKRPNVSSDHYCVTSQPLPNHSFVNNPAVDLALNMTEKTSKDPIFPVDLDAYRSVDLPYEVFM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1369 361 Gene3D High mobility group box domain 185 265 IPR036910 -
Tpr1g1369 361 SMART hmgende2 200 269 IPR009071 -
Tpr1g1369 361 CDD HMGB-UBF_HMG-box 204 259 - -
Tpr1g1369 361 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 200 259 IPR009071 -
Tpr1g1369 361 SUPERFAMILY ARID-like 29 120 IPR036431 GO:0003677
Tpr1g1369 361 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 348 - -
Tpr1g1369 361 SUPERFAMILY HMG-box 187 261 IPR036910 -
Tpr1g1369 361 SMART bright_3 30 120 IPR001606 GO:0003677
Tpr1g1369 361 MobiDBLite consensus disorder prediction 278 306 - -
Tpr1g1369 361 Pfam HMG (high mobility group) box 204 263 IPR009071 -
Tpr1g1369 361 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Tpr1g1369 361 Gene3D - 18 139 IPR036431 GO:0003677
Tpr1g1369 361 SMART ARID_2 26 115 - -
Tpr1g1369 361 Coils Coil 281 301 - -
Tpr1g1369 361 ProSiteProfiles ARID domain profile. 22 119 IPR001606 GO:0003677
Tpr1g1369 361 MobiDBLite consensus disorder prediction 278 305 - -
Tpr1g1369 361 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 11 348 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1369 35 255 ARID Transcription Factor Family AT3G13350 23.200 8.55e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr1g1369 ARID 6.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1369 - - mtr:MTR_5g095070 303.523