Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1353 ATGCCAATAAGAAAGTATTACTGCGAATACTGCGAAAAGCAATTTCAAGACACTCCGTCGGATCGAAAACGCCACTCTGCAGGCATTCAACACCAGCAAGCCAAAGCTCGTTGGTATGATTCCTTCAAACCCCAACAACAACAACAACACAACCCTAATATTCCACCTAATCAACCCTTCTGCTCCCACTTCATCAACACGGGTTTTTGTCGCTACGGCGATTCTTGCAAATATTTTCATCCCAATACCAACAACAATATACAGCAGCAGCATCAACCAATAATTAACAACACACCAAGGGATGTAGTTGTAGAAAGTATGGGAGTGTCGTTGGGGAATTTACCTCCGTCGCTACAGCCTCCGCCTGAGGGTGGATACCCCACATTGCCTTTGTCAACTGGGGATAGAATTGTAATTGTATCCATCCATCCTGCCTAA 438 0.4475 MPIRKYYCEYCEKQFQDTPSDRKRHSAGIQHQQAKARWYDSFKPQQQQQHNPNIPPNQPFCSHFINTGFCRYGDSCKYFHPNTNNNIQQQHQPIINNTPRDVVVESMGVSLGNLPPSLQPPPEGGYPTLPLSTGDRIVIVSIHPA* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1353 145 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Tpr1g1353 145 Gene3D Classic Zinc Finger 3 54 - -
Tpr1g1353 145 SUPERFAMILY CCCH zinc finger 58 83 IPR036855 GO:0046872
Tpr1g1353 145 Gene3D - 56 100 - -
Tpr1g1353 145 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 81 IPR000571 GO:0046872
Tpr1g1353 145 PANTHER NUCLEASE-RELATED 1 131 - -
Tpr1g1353 145 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Tpr1g1353 145 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1353 Tpr-Chr1 12374449 12375930 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g1353 zf-U1 1.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1353 K13152 - gmx:100527203 168.318