Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1352 ATGAGGGACATGGTTCTAAATCTGCAGAAGCTTATTCCCTCACCACCGAAACCACCACAGTTCCTCCTAAATCACAAGGAAATGGAAGCCACGGTTGTTGACAGCGGCAATGGAACCGAGACCGGACATATTATTGTGACTACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAATCGGGAATTGCAAACAATGCGCCTTCTTGATCATCCAAATGTCGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCCGAAACAGTTCATCGTGTGATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACGTACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGTGTCTGCCATCGGGATATCAAACCTCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTTTTGGTTAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATTTTTGGAGCAACTGAATACACTACAGCTATTGATGTCTGGTCTGTTGGTTGTGTTTTGGCCGAGGTGCTGCTTGGACAGCCGTTGTTCCCTGGCGAGAGTGGAGTTGATCAGCTCGTTGAAATCATCAAGGTTCTGGGAACTCCAACAAGAGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCTCAAATTAAAGCTCATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGATTATTACAATACTCTCCAAACCTGCGGTGCCAAGCTTTAGATGCCTTGACCCATCCTTTCTTTGACGAGCTTCGTGACCCGAATGCTCGCTTGCCGACTGGTCGTTTCCTTCCACGACTATTTAACTTCAAACCTCACGAACTAAAAGGAATCCCAGTCGAGACCTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTAA 1197 0.4252 MRDMVLNLQKLIPSPPKPPQFLLNHKEMEATVVDSGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPMIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAEVLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCQALDALTHPFFDELRDPNARLPTGRFLPRLFNFKPHELKGIPVETLVKLVPEHARKQCPFLGL* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1352 398 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 24 396 - -
Tpr1g1352 398 Gene3D Phosphorylase Kinase; domain 1 46 141 - -
Tpr1g1352 398 SUPERFAMILY Protein kinase-like (PK-like) 61 372 IPR011009 -
Tpr1g1352 398 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524
Tpr1g1352 398 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 24 396 - -
Tpr1g1352 398 Gene3D Transferase(Phosphotransferase) domain 1 142 390 - -
Tpr1g1352 398 CDD STKc_GSK3 57 349 IPR039192 -
Tpr1g1352 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Tpr1g1352 398 ProSiteProfiles Protein kinase domain profile. 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1352 398 Pfam Protein kinase domain 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1352 398 SMART serkin_6 62 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1352 Tpr-Chr1 12368713 12372649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1352 66 351 MAP Kinase Gene Family AT3G59790 35.034 1.01e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tpr1g1352 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1352 K00924 - qsu:112005327 744.191