Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1351 ATGCCAATAAGAAAGTATTACTGCGAATACTGCGAAAAGCAATTTCAAGACACTCCATCGGATCGAAAACGTCATTCTGCAGGCATTCAACACCAGCAAGCCAAAGCTCGTTGGTATGATTCATTCAAACCCCAACAACACAACCCTAATATTCCACCTAATCAACCCTTCTGCTCCCACTTCATCAACACGGGTTTTTGTCGTTACGGCGATTCTTGCAAATATTTTCATCCCAATACCAACAACAATATGCAGCAACATCAACCAATAATTAACAACACACCAGGGGATGTAGTTGTAGAAAGCATGGGGTTGTCTTTGGGCAATTTACCTCCGTCGCTGCAGCCACCGCCTGAGGGTGGATACCCTCACATTCCCTTTGTCGACTGGGGATAG 396 0.4495 MPIRKYYCEYCEKQFQDTPSDRKRHSAGIQHQQAKARWYDSFKPQQHNPNIPPNQPFCSHFINTGFCRYGDSCKYFHPNTNNNMQQHQPIINNTPGDVVVESMGLSLGNLPPSLQPPPEGGYPHIPFVDWG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1351 131 SUPERFAMILY beta-beta-alpha zinc fingers 4 51 IPR036236 -
Tpr1g1351 131 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 78 IPR000571 GO:0046872
Tpr1g1351 131 PANTHER NUCLEASE-RELATED 1 131 - -
Tpr1g1351 131 SUPERFAMILY CCCH zinc finger 55 80 IPR036855 GO:0046872
Tpr1g1351 131 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Tpr1g1351 131 Gene3D - 52 94 - -
Tpr1g1351 131 Gene3D Classic Zinc Finger 3 51 - -
Tpr1g1351 131 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1351 Tpr-Chr1 12367895 12368796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1351 54 93 C2H2 Transcription Factor Family AT5G18550 42.500 2.98e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g1351 zf-U1 1.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1351 K13152 - gmx:100527203 191.045