Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1350 ATGGCGGCGTCCGTTGGCGTGGCACCGACTTCAGGTTTTAGAGAAGCCAGTGGTCATGGTGAAATTGGTGTTGATGATATATTGCCAGAGGAAATGAATGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACGGTTGTTGACAGCGGCAATGGAACCGAGACCGGACATATTATTGTGACTACTATTGGTGGTAGAAATGGCCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAATCGGGAATTGCAAACAATGCGCCTTCTTGATCATCCAAATGTCGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCCGAAACAGTTCATCGCGTGATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACGTACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGTGTCTGCCATCGGGATATCAAACCTCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTTTTGGTTAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATTTTTGGAGCAACTGAATATACTACAGCTATTGATGTCTGGTCTGTTGGTTGTGTTTTGGCCGAGCTGCTGCTTGGACAGGTTGGTAGCTGTTGGTGTAATATCCTACAATTTTGTAATTTAGTACATTTAATTGAAATATTTATTTGCTTTTCCCAGCCGTTGTTCCCTGGCGAGAGTGGAGTTGATCAGCTCGTTGAAATCATCAAGGTTCTGGGAACTCCAACAAGAGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCTCAAATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGATTATTACAATACTCTCCAAACCTGCGGTGCCAAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGACCCGAATGCTCGCTTGCCGACTGGTCGTTTCCTTCCACCACTATTTAACTTCAAACCTCACGAACTAAAAGGAATCCCAGTCGAGACCTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGCCCGTTTCTTGGCTTGTAA 1320 0.4167 MAASVGVAPTSGFREASGHGEIGVDDILPEEMNDMKIRDDREMEATVVDSGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPMIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQVGSCWCNILQFCNLVHLIEIFICFSQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCQALDALTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGIPVETLVKLVPEHARKQCPFLGL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1350 439 Gene3D Transferase(Phosphotransferase) domain 1 157 431 - -
Tpr1g1350 439 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1350 439 SUPERFAMILY Protein kinase-like (PK-like) 76 413 IPR011009 -
Tpr1g1350 439 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524
Tpr1g1350 439 CDD STKc_GSK3 72 390 IPR039192 -
Tpr1g1350 439 SMART serkin_6 77 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1350 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Tpr1g1350 439 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 276 - -
Tpr1g1350 439 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 298 437 - -
Tpr1g1350 439 Gene3D Phosphorylase Kinase; domain 1 61 156 - -
Tpr1g1350 439 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 3 276 - -
Tpr1g1350 439 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 298 437 - -
Tpr1g1350 439 Pfam Protein kinase domain 77 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1350 439 ProSiteProfiles Protein kinase domain profile. 77 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1350 Tpr-Chr1 12359603 12363725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1350 81 392 MAP Kinase Gene Family AT3G59790 32.188 7.69e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tpr1g1350 Pkinase 3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1350 K00924 - gmx:100780226 791.571