Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1329 ATGTCCAACGATCATTCTCATGCTCCTAATCTTTATGCCAAAGGTATTCTTTGCAATGCTGCTGCTGGTGCCGCAGCTGGGGTTATTTCTGCCTCGTTTGTATGTCCTTTAGATGTAATTAAAACTAGGTTACAGGTTCATGGGACTCCTGAGCTTGCTAATGGAAATGTTAAAGGTAGTCTTATAGTTGGTAGTTTGGGACAAATATATCAGAAGGAGGGGTTGCGTGGAATGTACCGCGGGCTAGCTCCCACTGTTTTGGCCTTACTTCCAAACTGGGCTGTCTATTTTACCATATACGAGCAGCTCAAGTGGCTGCTTTCTGAAGATGAAAACCAGCGTCTTTCAGTTGGAGCTAATATGGTAGCTGCTTCAGGTGCCGGAGCTGCAACTACTATAGTCACAAATCCATTTTGGGTTGTCAAGACTAGACTCCAAACCCAGGGAATGAGACCCGGTGTTGTGCCATATAAAAACACCCTATCTGCTTTGAAGAGAATAGCTCATGAGGAGGGCATTCGTGGGATGTACAGTGGCCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAGTTTCCAATATATGAGAAAATAAAATTTCATTTAGCAAATCAAGATAACACAACAGTGGGTAAACTCGGTGCACGTGATGTTGCAATTGCCTCGTCAGTCTCCAAAATGTTTGCATCCACATTGACATATCCTCATGAGGTTGTTCGTTCCAGACTGCAAGAACAAGGACACCACTCAGAGAAGCGGTACTCTGGTGTGACAGACTGCATTAGAAAGGTATTTCAAGAAGGGGGACTTTCTGGTTTTTACCGCGGGTGTGGTACCAACCTCCTGAGGACAACCCCAGCTGCCGTAATCACATTCACCAGTTTTGAAATGATACACCGTTTTCTAGTTTCTCTTTCCCCTTCTGACCCACCGCCACATAATTTGTAA 954 0.4497 MSNDHSHAPNLYAKGILCNAAAGAAAGVISASFVCPLDVIKTRLQVHGTPELANGNVKGSLIVGSLGQIYQKEGLRGMYRGLAPTVLALLPNWAVYFTIYEQLKWLLSEDENQRLSVGANMVAASGAGAATTIVTNPFWVVKTRLQTQGMRPGVVPYKNTLSALKRIAHEEGIRGMYSGLVPALAGISHVAIQFPIYEKIKFHLANQDNTTVGKLGARDVAIASSVSKMFASTLTYPHEVVRSRLQEQGHHSEKRYSGVTDCIRKVFQEGGLSGFYRGCGTNLLRTTPAAVITFTSFEMIHRFLVSLSPSDPPPHNL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1329 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 203 IPR018108 -
Tpr1g1329 317 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Tpr1g1329 317 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Tpr1g1329 317 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Tpr1g1329 317 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Tpr1g1329 317 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Tpr1g1329 317 Gene3D Mitochondrial carrier domain 110 309 IPR023395 -
Tpr1g1329 317 Gene3D Mitochondrial carrier domain 2 109 IPR023395 -
Tpr1g1329 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Tpr1g1329 317 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 2 316 IPR044712 GO:0006862|GO:0055085
Tpr1g1329 317 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Tpr1g1329 317 Pfam Mitochondrial carrier protein 221 305 IPR018108 -
Tpr1g1329 317 Pfam Mitochondrial carrier protein 114 206 IPR018108 -
Tpr1g1329 317 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
Tpr1g1329 317 SUPERFAMILY Mitochondrial carrier 16 299 IPR023395 -
Tpr1g1329 317 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 2 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1329 Tpr-Chr1 11961591 11968779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1329 5 311 Chloroplast and Mitochondria Gene Families AT2G47490 73.941 2.72e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1329 K15115 - zju:107426265 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1329 1 11961591 11968779 Tpr1g1329 1 11961591 11968779 ECH