Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1324 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGCGGTCGTCGTCTCACCGCCGCTGAACTCTGGCCTAACTCATTCGGTCAACAAATTGACTCCACTTCATCAGACTTTGATTTTTCTCATACTGTTGATCAACAACCACCACCACCACCCACTACTCTCAAAAGATCACACCCTCTCAAAGTTAACGAGCGAGTTGAAAAGCCGGTGAAAAAACAGAGGAAGAATCTCTACAGAGGGATTCGACAACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCTAGAAAAGGAGTTCGTGTTTGGCTTGGTACATTCAACACTGCTGAGGAAGCTGCTAGAGCTTATGACAAAGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTTAATTTCCCTAATGAAGATGATGAATATTCCATTCAAGCTAATCGTCGTCCACCGCAACCGATTCGACCGCCTAATCATGCTCTCTATCATCAACAACAACATCATCAGCAACAATATCCAAAAAATCTGAACTTGGAATTTGGTTATGATCTGAACCAAGCTGACACAATTCAAAATTCTCATGTGGGTTCAATGAACACTGAACCTTTTATTATATCTGGTTCTGGTGGTTCTGGTGGTGATGAGAATTCTGTATATGGGTCTGGTTCAGGTTCTGAAATCGGTTATTCCGTGATAGAGTTCAATGATGGTTCGAATCCGAATGAAACCGGTTATTTCTGTGGTGTTGTGAATGAACATGAGAAAGAAAAAGAGAAACTTCAAGTGCAAGAAACACAACATGCTGTTGAAGCTGATGAAGCAGCTAAGAATGAAGTTCAAGAGTTATCTGATGAATTAATGGCTTATGAGGATTACATGAAGTTTTATCAGATTCCATACTATGATGGACAATCTATGCCACCAAATATTGTTCAGGAACATGTTGTTGGTGATTTATGGAGCTTTGATTGA 975 0.4164 MCGGAIIADFIPRRGGRRLTAAELWPNSFGQQIDSTSSDFDFSHTVDQQPPPPPTTLKRSHPLKVNERVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDEYSIQANRRPPQPIRPPNHALYHQQQHHQQQYPKNLNLEFGYDLNQADTIQNSHVGSMNTEPFIISGSGGSGGDENSVYGSGSGSEIGYSVIEFNDGSNPNETGYFCGVVNEHEKEKEKLQVQETQHAVEADEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1324 324 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 PANTHER EREBP TRANSCRIPTION FACTOR 1 302 - -
Tpr1g1324 324 PANTHER DNA-BINDING DOMAIN 1 302 IPR044808 GO:0003700|GO:0009873
Tpr1g1324 324 Coils Coil 273 293 - -
Tpr1g1324 324 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Tpr1g1324 324 CDD AP2 81 138 IPR001471 GO:0003700|GO:0006355
Tpr1g1324 324 MobiDBLite consensus disorder prediction 41 63 - -
Tpr1g1324 324 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1324 Tpr-Chr1 11917573 11919164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1324 1 138 AP2-EREBP Transcription Factor Family AT3G16770 52.482 1.04e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g1324 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1324 K09286 - gmx:100780763 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1324 1 11917573 11919164 Tpr1g1324 1 11917573 11919164 ECH