Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1315 ATGGCTTTCAATAAGAAAACCATTCTACTTTCCATCTTGTTCTTTGTATCATTGTCTGTAGCAAATGGTGTTCCACCTGAAACCATTTGTGGGTCTACTATAGACCCTACTTATTGTAAAAATGTACTTGCCAATCAAAATGGCAACATTTATGACTATGGTCGCATTTCTATTCGTAAATCTTTATCCCAATCTCGGAAGTTCATTAATTCGATGGACTCGTATCTTCAAGGTAGCTCGTCTTTGTCTCAATCGACAATCCGTGCCCTTGAAGATTGTCGATTCCTCTCTGACTTAAGTTTTGAATACTTATCAAACACTTATGCCACTACAAATCAATCTAATAATGTTCTTCCAACAACTCAAGCTGAGGATTTTGAAACTTTTCTCAGTGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTCTCAACACTATAGCTTCTGATCAAAGAGTGAAAAACGACGTGTCGTCATCACTCTCTGATGCCATAAAGCTTCATAGTGTCACCCTAGCTTTGTTCAAGAAGGGCTGGGTGCCTGAAAATAAAATAAGAACATCATGGCCACAAAACGGAAGACATTTGAATTTCAATAATGGTCGTTTACCATTGAAAATGTCAAATAAAGTACGTGCTATTTATGATTCAGCTAGACACCATGGAAGAAAATTACTTCAAACGAATAGTGGTGAAGATAGTGTTGTGGTGAGTGATATTGTAGTTGTTAGCCAAGATGAAAGTGGAAATTTTACCACCATCAACGACGCAATAGCTGCTGCACCGAATAACACGGTTGCTAGCGATGGATACTTCTTCATTTTAATCACTAAAGGTGTGTATCAAGAGTATGTATCTATACCCAAAAACAAGAAGTACTTGATGATGGTTGGAGAAGGAATCAATCAAACAGTTATCACAGGCGATCACAATGTTGTTGATGGGTCCACTACATTCAATTCGGCCACATTTGCTGTGGTTGCTCAAGGGTTTGTGGCTGTAAACATAACATTTCGCAACACCGCTGGACCAGGAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCGACCTTCTATAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGATTTCATATTTGGAAATGCTGCGGTTGTTTTGCAAAATTGTAACATTTATCCACGCCTTCCTCTAAGTGGACAATTCAATTCCATCACAGCTCAAGGTAGAACCGATCCAAATCAAAACACCGGAACGTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCCAAAGTTGGAACTGTTCAAACATATCTAGGAAGACCATGGAAGGAATACTCAAGGACAGTTTTTATGCAATCATCTATGGATAATTTCATAAACTCAGCTGGTTGGCATGATTGGAATGGTAGTTTTGCATTGAGCACGTTGTACTATGCAGAATACAATAATAGAGGTGCAGGTTCAAGCACTGTGAATCGTGTTACATGGCCTGGTTATCATGTTATTGGTGCTACTGATGCAGCCAATTTCACAGTGTCCAATTTCTTGAGTGGTGATGGTTGGATTCCTCAAACTGGTGTACCATACTTGAGTGGATTGACCTAG 1665 0.3892 MAFNKKTILLSILFFVSLSVANGVPPETICGSTIDPTYCKNVLANQNGNIYDYGRISIRKSLSQSRKFINSMDSYLQGSSSLSQSTIRALEDCRFLSDLSFEYLSNTYATTNQSNNVLPTTQAEDFETFLSAVLTNQQTCLDGLNTIASDQRVKNDVSSSLSDAIKLHSVTLALFKKGWVPENKIRTSWPQNGRHLNFNNGRLPLKMSNKVRAIYDSARHHGRKLLQTNSGEDSVVVSDIVVVSQDESGNFTTINDAIAAAPNNTVASDGYFFILITKGVYQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGSTTFNSATFAVVAQGFVAVNITFRNTAGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSSMDNFINSAGWHDWNGSFALSTLYYAEYNNRGAGSSTVNRVTWPGYHVIGATDAANFTVSNFLSGDGWIPQTGVPYLSGLT* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1315 554 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Tpr1g1315 554 PANTHER PECTINESTERASE 9 552 - -
Tpr1g1315 554 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Tpr1g1315 554 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 9 552 - -
Tpr1g1315 554 SUPERFAMILY Pectin lyase-like 236 552 IPR011050 -
Tpr1g1315 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Tpr1g1315 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Tpr1g1315 554 SMART PMEI_2 21 174 IPR006501 GO:0004857
Tpr1g1315 554 Pfam Plant invertase/pectin methylesterase inhibitor 27 174 IPR006501 GO:0004857
Tpr1g1315 554 CDD PMEI-like_3 28 179 - -
Tpr1g1315 554 Gene3D - 235 553 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1315 Tpr-Chr1 11844810 11846803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1315 7 553 Carbohydrate Esterase AT4G02330 59.894 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1315 K01051 - gmx:100813051 857.055