Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1314 ATGCCTGAAAATAAAATAAGAACATCATGGCCACAAAAAGGAAAACATTTGAATTTTAAAAATGGTCGTTTACCATTGAAAATGTCAAATAAAGCACGTGCTATTTATGATTCTTCTAGACACCATGTAAGAAAACTACTTCAAATGGTCACTAATGAAGATAATGTTGTCGTGAGTGATATTGTGGTTGTTAGCCAGGACGGAAGTGGAAATTTTACCACTATCAACAACGCAATAGCAGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTTCTTCATTTTTATCACTAAAGGTGTATATCAAGAGTATGTATCTATACCAAAAAACAAGAAGTACTTGATGATGGTTGGAGAAGGAATCAATCAAACAGTTATAACAGGCGATCACAATGTTGTTGATGGGTTCACTACATTCAATTCAGCCACATTTGCTGTGGTTGGTCAGGGGTTTGTCGCTGTAAATATAACGTTTCGCAATACTGCTGGACCAGGAAAACATCAAGCAGTTGCACTGAGAAGTGGAGCAGATATGTCGACCTTCTATAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGACTTTATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAACATTTATCCTCGCCTTCCTCTTAGTGGTCAATTCAATTCCATCACAGCTCAAGGTCGAACCGATCCAAATCAAAACACCGGAACGTCCATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCTAAAGTTGGAACAGTTCAAACATATCTAGGAAGACCATGGAAGGAATACTCAAGGACAGTATTTATGCAATCCTCCATGGATAGTTTCATAAACCCAGCTGGTTGGCATGATTGGAATGGTAGTTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATAGAGGTGCAGGTTCAAGCACTGTGAATCGTGTTACATGGCCTGGTTATGGTGCTACTGATGCAGCCAATTTCACAGTGTCCAATTTCTTGACTGGTAGTTGGATTCCTCAAACTGGTGTCCCTTTCTTGACTGGATTGATATAG 1116 0.3826 MPENKIRTSWPQKGKHLNFKNGRLPLKMSNKARAIYDSSRHHVRKLLQMVTNEDNVVVSDIVVVSQDGSGNFTTINNAIAAAPNNTVASDGYFFIFITKGVYQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPGKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSSMDSFINPAGWHDWNGSFALSTLYYAEYNNRGAGSSTVNRVTWPGYGATDAANFTVSNFLTGSWIPQTGVPFLTGLI* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1314 371 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
Tpr1g1314 371 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 18 368 - -
Tpr1g1314 371 Pfam Pectinesterase 62 356 IPR000070 GO:0030599|GO:0042545
Tpr1g1314 371 Gene3D - 56 370 IPR012334 -
Tpr1g1314 371 SUPERFAMILY Pectin lyase-like 58 369 IPR011050 -
Tpr1g1314 371 PANTHER PECTINESTERASE 18 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1314 Tpr-Chr1 11830589 11832542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1314 19 371 Carbohydrate Esterase AT1G02810 69.613 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1314 K01051 - gmx:100786124 614.379