Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1306 ATGAGCGGAACAAAGGGGAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCACGAAGCCAGTTGAAGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCCGTCACCGTTACTCGTGAGAAGAGTAAGATCACCGTTACTTCCGATAGCAATTTCTCCAAAAGGTATCTGAAGTACTTAACAAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCCTCCAACAAGGACCGCAATGTCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 360 0.4361 MSGTKGKKKGTSFVIDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1306 119 Pfam Ribosomal L22e protein family 9 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tpr1g1306 119 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 2 119 - -
Tpr1g1306 119 PANTHER 60S RIBOSOMAL PROTEIN L22 2 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tpr1g1306 119 Gene3D - 1 119 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1306 Tpr-Chr1 11752110 11753671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1306 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.655 5.52e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1306 K02891 - pop:7455994 213.001