Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1302 ATGGTCAGAAGAAAATCACACCTTACTTTACTGGTTACATTTATTTTTCTTTCATACCTTGCAAATACTAGCCAATTGGTATTTGCAAAAGAGAAAGACAATGTAAAAGATGCTTGCAAAGTAACTAGGTATCAAAACCTTTGCAAGCGCTCGCTAGCACCGTTCTCTAACAGTGCTGGAAGAAGCCCCAGCAAGTGGGCAAGGGCAGGAGTTTCAGTTACAATCGGCGAGGTTGAGCATGTTCAAACATATCTGGCAAACTTAAAGAGACACGGGCATTTAAGAGGAAGAAACAAAGTTGCGCTTTTAGATTGTGTTGAGACTTTTGCAGATGCCCTTGATGAGCTTCATAGGTCACTGAATGTGCTCAGAAGACTTAGCAGAAACACATTTGGTACACAAATGGGGGACCTTAATTCATGGATAAGTGCAGCACTCACAAATCAAGATACTTGCCTCGATGGATTTCAAGGCGAAAACGGTAGGAAAATTAAATTGCTGCGAAATAAGGTTGTACAAGTCTATTATATAACCAGTAACGCTCTAGCTCTCGTCAACAAACTTGCCACTACAGGACTAGGAAGCATTTCTGATCCATAG 600 0.41 MVRRKSHLTLLVTFIFLSYLANTSQLVFAKEKDNVKDACKVTRYQNLCKRSLAPFSNSAGRSPSKWARAGVSVTIGEVEHVQTYLANLKRHGHLRGRNKVALLDCVETFADALDELHRSLNVLRRLSRNTFGTQMGDLNSWISAALTNQDTCLDGFQGENGRKIKLLRNKVVQVYYITSNALALVNKLATTGLGSISDP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1302 199 CDD PMEI-like_3 38 190 - -
Tpr1g1302 199 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Tpr1g1302 199 SMART PMEI_2 30 184 IPR006501 GO:0004857
Tpr1g1302 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 190 IPR035513 -
Tpr1g1302 199 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 21 183 - -
Tpr1g1302 199 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 188 IPR006501 GO:0004857
Tpr1g1302 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 188 IPR035513 -
Tpr1g1302 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 21 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1302 Tpr-Chr1 11708236 11709587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1302 35 193 Carbohydrate Esterase AT3G14310 35.976 4.11e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1302 - - mtr:MTR_1g088540 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1302 1 11708236 11709587 Tpr1g1302 1 11708236 11709587 ECH