Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1294 ATGAAGTTCTGCAAAAAATATCAGAAGTATATGCGAGATCATGAGCAGGAGCAGAACAAGCTCCCTGCCGTTGGATTCAAAAACCTCAAAAAAATCATCAAAAAATGTAGACGATCTTCTCAATTGCACAAAAACTGCCCCGATCAATGCCCAGTGTGTGATGGGACCTTTTTCCCTTCGCTTCACAATGAAATGTCAGAAATAGTGGGATGCTTTAATCAGCGTGCACAGAAATTGCTGGAAAAACATCTTGCATCTGGATTCAGAAAGTACATTCTCATGTTGAAAGGAAAATCAAAAGGAAATCATACTACTTTAATTCATGAAGGCGGAGATCTAGTTACCTATGCACTGATAAACGCTGTTGCAATTCGCAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGCTCAGACTATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTATTGAGCTTATGGCATTACATATCAACTTAAGGGAAACTAAAGTCAACAACTTACGGGAAACTGAAGACAACTCAAGGAAGGCACCTGCATTATTTCAGGAAGATAAACCATCACTTGTTTGTGAGCCCTTTGATTCTATCAAAGTAGACATTGACTTGACATGCTCTATATGCTTGGACACCGTGTTTGATCCAGTTTCTCTAACTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCCTCTGTTAGTATTGTTGATGGACTTAAGGCAGCACATTCAAAAAAGAAATGTCCTCTATGCCGAGAGGCAGGGGTTTACAAAGGTGCTGTGCACTTGGACGAATTAAATATTCTGTTAGGACGAAGATGCAAGGACTATTGGGAGGAAAGGCTTCAGATGGAAAGGGTGGAGAGGGTCAAGCAAGCAAAGGAGCACTGGGAAACACAGTGTAGTGCGTTCATGGGCATCTAA 960 0.4073 MKFCKKYQKYMRDHEQEQNKLPAVGFKNLKKIIKKCRRSSQLHKNCPDQCPVCDGTFFPSLHNEMSEIVGCFNQRAQKLLEKHLASGFRKYILMLKGKSKGNHTTLIHEGGDLVTYALINAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMALHINLRETKVNNLRETEDNSRKAPALFQEDKPSLVCEPFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVSIVDGLKAAHSKKKCPLCREAGVYKGAVHLDELNILLGRRCKDYWEERLQMERVERVKQAKEHWETQCSAFMGI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1294 319 CDD SPX_BAH1-like 2 141 - -
Tpr1g1294 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 IPR033326 -
Tpr1g1294 319 Pfam Zinc finger, C3HC4 type (RING finger) 212 265 - -
Tpr1g1294 319 ProSitePatterns Zinc finger RING-type signature. 230 239 IPR017907 -
Tpr1g1294 319 ProSiteProfiles Zinc finger RING-type profile. 215 264 IPR001841 -
Tpr1g1294 319 SMART ring_2 215 263 IPR001841 -
Tpr1g1294 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 317 IPR013083 -
Tpr1g1294 319 SUPERFAMILY RING/U-box 208 267 - -
Tpr1g1294 319 ProSiteProfiles SPX domain profile. 1 145 IPR004331 -
Tpr1g1294 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1294 Tpr-Chr1 11633647 11637904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1294 205 264 C3H Transcription Factor Family AT4G28270 40.299 2.69e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1294 K16275 - gmx:100803060 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1294 1 11633647 11637904 Tpr1g1294 1 11633647 11637904 ECH