Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1288 ATGGTTGAAACTAGAAGCAGTTCCTCTTCTTCCAAACGTGCTCTCTCTTCTCCTTCATCTACTCCTTCAAACACAAAACGATCCAAGGTCTCAGGTGATGTCTCATCTGCTTCTAATCCTTCACCACCGGTCAACGAATCTGGAGAAAGAGAGATACGGCCATCTGATCTGCCTCAAAAGGCTGTTGATGGTGATAACAACAAGTCTTCTGAGACTTTGGTGTCTCCACCTCAGTGTTTAGAATCAGGTGAAATTGAGGAGAAATCAAGGATGTTACCACCACTTGCTCGGTCGAAGAAACGCTGCACGAAATCGAATCCTAAGACTGCTGCTTGGGGGAAGCTTATTTCTCAATCTTCTGAGAATCCTCACTTGTCCATGTGCGATCCTATCTACACTGTTGGTCAAGGTGGTCACTGTAATTTATGGCTTAAAGATCCTTCTCTTAGTAATGTTTTGTGCAAATTGAGCCACATAGAGTATGGAGGTCCGTCTGTTGCGTTGCTGGAAGTCATAGGGAGTAAAGGTGCTGTTAAAGTCAACGGAAAGACCTATGGGAATAAAACCCGCGTTATTTTAAGAGGAGGTGATGAAGTCGTCTTCGGTGTTTCTGGCAAGCAGGCTTATATCTTTCAGCAGCTCAATAATAATATCACCACTCCCAATATACCTTCTCCTGTGAGCATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACGCAAGTTGATGCAAGATCTGGTGACCTGTCGACTGTTGCTGAAGATTCAATATTGGCCGCTTTTTCAAATCTTAACGAAGATTCATCTATCATGCCACCTTCTGTTAACATTGACGCGAACATGCAACAGAAGACTGACGCTTCATCACTACCTGCCGGCAACGGGGATGATAAGACAATCGTTGATATAAAGCACAACACCATTAATAACGGACCAGATGGAGTTTCTTCTGCCGATAAAACTGGCTGTCCGTCCTCTACTACTGTTGACGAAGATCCTAAGGATGACACTGTAGAAGTCAACGCCAGTGTGGATGAAGATGTTGGGAAGATGACTGCTGCTACTTGCAAATTGAGTCCATTATTGCAAAAGCTTTCTGGATCATGTCCTGAATTTGATTTGAGTGGCAACATTGCCAAGATAATGGAAGAACGCAAGGGATTAAAGGATCTCCTTAAAGATGTCGGTACCTCAACAATACTGGCATCGCCCAAGCAACAAGCTTTGAAAGATAGCTTACCGATGAGAATTCTCAATGCTAAGAATATTGATGTTTCATTTGAAAATTTCCCATACTATCTAAGTGATACAACAAAGAATGTTTTGATCGCTTCTGCATACATTCACTTGAAGTGCAATGCCTCTGGAAAATATGTTTCAGACCTTCCGTCGTACCTTCCATCGTTGTCCCCACGGATTTTGTTATCTGGTCCTGCAGGCTCTGAAATATATCAGGAGACTCTATGCAAGGCACTTGCAAAGCATTTTGGTGCTTGGCTACTAATTGTGGATTCTCTTTCACCTCCCGGTAGAACACCGTTGAAGGAAGTTGATTCTATTAAAGTAAGTTCAAGGCCTGAAAGACCTTCTGTGTTTACTAAGAGAAGTATTCCGGCTGGTACAATACCTATACCCTCTAAGAAACCGGCTTCTAGTGTTGATGCCCAAATTATAGGTGGATCCGCATCAAGTTCACGGTTTATACTGAAGCAAGAAATTTCTACGGCATCATCAAAAGGCAGTACTTTTAAAACAGGTGATCGGGTAAAATATGTCGGTGACTTCCCTTCTGCTGTCTCATCACCACAAGTTTTTCCTTCAAGGGGACCAAGTTATGGCTGCCGGGGCAAAGTTCTCCTTGCTTTTGAAAATAACGGATCTTCAAAAATTGGAGTTAGATTTGAGAAATCAATTCCAGGTGGAAATGATCTTGGAGGCATTTGCGAAAATGACCGTGGCTTCTTTTGTTCCGCCAATCATTTGGTACTAGTAGATGGTGTTGGAGGGGATGATTCTGGCAAAGTTGCGATTAATGAAATCTTTGAGATTGCCTCTTTTCTGAGTAGAAGTGGAGCACTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTAGCTGGGAACTCAGAAGTTTTGAAAAGTAAATTCGGAAGCTTGCCGCAAAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAGTCGTAAGGAGAAGGTATTGTTTGATTATATTTGTCAGCAAGCATTTGAGTGTAATGATATCATGATTAGAGGGAAGTTTTTGCTACTGCATCTGATGATTGCATATTTATACTTCCAGACACAACCTGGCAGCCTTCTGTTTACAAAATTTGGAGGCAACCAGACAGCACTACTCGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTCAACAAGCTCTTCCCAAACAAAGTTACAATACAGCTACCTCAGGATGAGACTTTACTTTCTGATTGGAAGCAGCACCTAGATCGTGACATAGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTCCTCAACAGGTTTGGACTGGATTGCCCTGACCTTGAGACTCTTTCAATCAAAGATCAAACTCTGACAACTGAAAATGTGGAGAAGATTATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAACCTCTACCAAAGAATCAAAGCCTGTGATATCTGCAGAGAGTATTCACTATGGCTTCAACATTCTACAGGGCATTCTAAATGAGAACAAGAGCTTAAAAAAGTCACTGAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGAAACCTTAAAAGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCCCCTGGCACGGGTAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCAAATTTTATTAACATCTCCATGTCTAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTAGCCAGCAAAATTGCCCCTAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAATAGGCCTTTTGATCTTGATGAAGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATGCAGCAAACAGAGCAAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGGCTGATGTTGATTTAGAAGCATTGGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTATGTGTCACAGCAGCGCACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGATAGAAGCTCTGCGTTGGCTGAGAACAAACCTCTACCTGGGTTGTGTAGCAGTTCCGACATTCGTCCTTTAAAGATGGAAGATTTTAGATATGCACACGAGCAGGTGTGCGCAAGCGTGTCATCGGATTCAAATAATATGAATGAATTAGTCCAATGGAATGACCTCTACGGTGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3813 0.4154 MVETRSSSSSSKRALSSPSSTPSNTKRSKVSGDVSSASNPSPPVNESGEREIRPSDLPQKAVDGDNNKSSETLVSPPQCLESGEIEEKSRMLPPLARSKKRCTKSNPKTAAWGKLISQSSENPHLSMCDPIYTVGQGGHCNLWLKDPSLSNVLCKLSHIEYGGPSVALLEVIGSKGAVKVNGKTYGNKTRVILRGGDEVVFGVSGKQAYIFQQLNNNITTPNIPSPVSILEAQGASITGTQVDARSGDLSTVAEDSILAAFSNLNEDSSIMPPSVNIDANMQQKTDASSLPAGNGDDKTIVDIKHNTINNGPDGVSSADKTGCPSSTTVDEDPKDDTVEVNASVDEDVGKMTAATCKLSPLLQKLSGSCPEFDLSGNIAKIMEERKGLKDLLKDVGTSTILASPKQQALKDSLPMRILNAKNIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVSDLPSYLPSLSPRILLSGPAGSEIYQETLCKALAKHFGAWLLIVDSLSPPGRTPLKEVDSIKVSSRPERPSVFTKRSIPAGTIPIPSKKPASSVDAQIIGGSASSSRFILKQEISTASSKGSTFKTGDRVKYVGDFPSAVSSPQVFPSRGPSYGCRGKVLLAFENNGSSKIGVRFEKSIPGGNDLGGICENDRGFFCSANHLVLVDGVGGDDSGKVAINEIFEIASFLSRSGALVLLIKDIEKGVAGNSEVLKSKFGSLPQNVVVIGSHIQPDSRKEKVLFDYICQQAFECNDIMIRGKFLLLHLMIAYLYFQTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNKLFPNKVTIQLPQDETLLSDWKQHLDRDIETMKAQSNVVSIRLVLNRFGLDCPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTKESKPVISAESIHYGFNILQGILNENKSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANRAKIMRVILAKEDLAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKDRSSALAENKPLPGLCSSSDIRPLKMEDFRYAHEQVCASVSSDSNNMNELVQWNDLYGEGGSRKKTSLSYFM* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1288 1270 MobiDBLite consensus disorder prediction 1 104 - -
Tpr1g1288 1270 MobiDBLite consensus disorder prediction 62 77 - -
Tpr1g1288 1270 CDD FHA 129 203 IPR000253 GO:0005515
Tpr1g1288 1270 SUPERFAMILY SMAD/FHA domain 111 206 IPR008984 GO:0005515
Tpr1g1288 1270 MobiDBLite consensus disorder prediction 309 334 - -
Tpr1g1288 1270 MobiDBLite consensus disorder prediction 1 45 - -
Tpr1g1288 1270 Pfam ATPase family associated with various cellular activities (AAA) 1006 1135 IPR003959 GO:0005524|GO:0016887
Tpr1g1288 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 965 1241 IPR027417 -
Tpr1g1288 1270 Gene3D - 1138 1232 - -
Tpr1g1288 1270 ProSitePatterns AAA-protein family signature. 1109 1128 IPR003960 GO:0005524|GO:0016887
Tpr1g1288 1270 CDD AAA 1004 1137 - -
Tpr1g1288 1270 Gene3D - 111 220 - -
Tpr1g1288 1270 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 49 747 - -
Tpr1g1288 1270 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 787 1270 - -
Tpr1g1288 1270 MobiDBLite consensus disorder prediction 309 328 - -
Tpr1g1288 1270 Pfam FHA domain 132 202 IPR000253 GO:0005515
Tpr1g1288 1270 Gene3D - 964 1242 IPR027417 -
Tpr1g1288 1270 SMART AAA_5 1002 1139 IPR003593 -
Tpr1g1288 1270 Pfam AAA+ lid domain 1159 1194 IPR041569 -
Tpr1g1288 1270 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 747 - -
Tpr1g1288 1270 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 787 1270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1288 Tpr-Chr1 11577159 11589797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1288 965 1250 Calmodulin-binding Proteins AT3G56690 36.552 2.28e-41 164