Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1287 ATGGTTGAAACCCGTCGCGGTTCTTCTTCTTCTTCCAAACGTCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACCACCTTACCTTCTGTTCCGGTTAAAGAATCTCAACCAACAAACGAATCTGGTGAACCTGTTATACAACAACAACAACAACAGCAACAACCCTCTGATCTACCTGAAACGGCGTCGTTGAACGGTGTTGATGCTGATAAAGATAAGACACCTTCTGTGCCAATTGAAGATGACCCTTTGGTGTCTTCTCAGTGTCCAGGTGAAACTGCTGAGAAATCGAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTAGGAAAAAACGGACGGTGGCTAAACTGATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGCCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCTACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACATGGAGGTTCATCAGTTGCCCTACTGGAAACCGCAGGGGGTAAAGGTGTTGTTCAAGTCAACGGCAAGACTTGCCGAAGGAATGCCAAACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCGCTTCAGGAAAGCATGCTTATATCTTTCAGCAGCTCAAAAGTAATAATATTTCTAGTGCTGGTATACCTCCTATGAATATTTTAGAAGCCCAGAGTGCTGCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCGTCAGCTGTTGCAGGAGCATCAATATTGGCTTCTCTATCTAATATTCACAAAGATTTATCTCTCATTTCACCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATAATTCATCACTACCTTCTGACCATGGGGATAATGGTCCGGACAGTGATATGAAAGATACCACAAATAATGATGAATCGGAGGGATTTTTTTCTTCTGGTAAAGATGCTGCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGGATGCCAATGTGGGCACAGATGTTGGGAAGATGACTGCTGCTAATTACGAATTGAGGCCGTTACTGTGTATGCTTACTGGCTCAGGAACTGAATTTGATTTAAGTGGCAGCATTAACAAGATATTAGAAGATCGAAAGGAACTTAAAGATGTTGATAATCCAACATTATTGGCATCCACTAGGCGACAAGCATTTAGAGATAGCCTAGAACAGAGAATCCTCAATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATATAAGCGATACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTGTTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGACTACTGATTGTGGATTCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCTGAAAGGCCATCTGTTTTGTCTAAGAGAAGTGGCCAGACTTCTATATTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACCTTAAGTTCGCAGGCTATGCTGAAACAAGAGGTTTCTACTGCATCATCAAAAGCCGCTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTCTCGTCACTACAAAATTTTTCTTCAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGAGTCTTCAAAAATTGGGGTCAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACGGATGTTTTGAAAAGTAAATTTGAAACCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGGTATTAGCATTTGGTAGATGTGATCTCATGATTATAAGAAAGATTGTATTTCTGTATCTGATAACTGTCTTTTTATGCTTCAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTTGGCAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGCAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTCAGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGAAGAGGCTTTACTTTCTGACTGGAAGAAGCTGTTAGATCATGATATTGAAACTATGAAAGCACAATCCAATGTTGTCATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTACTGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACTACTGAAAATGTGGAGAAGATCATCGGATGGGCTATAACTTACCATTTTATGCATTCATTTGAAGCTTCCACCAAAGACTTAAAGCGTGTGATATCTGCGGAAAGCATAAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCACTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCGCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTGCTTTTCGGCCCCCCTGGCACGGGAAAAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAACCCCGGCGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTACGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTAACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCCGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAATGAGCTACAACAATGGAATGACCTTTATGGTGAAGGCGGATCAAGAAAAATGAGATCTTTAAGCTACTTCATGTGA 3825 0.4165 MVETRRGSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESQPTNESGEPVIQQQQQQQQPSDLPETASLNGVDADKDKTPSVPIEDDPLVSSQCPGETAEKSKVAVAPVVSSRKKRTVAKLIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQQHGGSSVALLETAGGKGVVQVNGKTCRRNAKLILNGGDEVIFGASGKHAYIFQQLKSNNISSAGIPPMNILEAQSAAMNGMQVEARSGDPSAVAGASILASLSNIHKDLSLISPPAKACKKQSADNNSSLPSDHGDNGPDSDMKDTTNNDESEGFFSSGKDAAASSTTGNENPSLDTMDVDANVGTDVGKMTAANYELRPLLCMLTGSGTEFDLSGSINKILEDRKELKDVDNPTLLASTRRQAFRDSLEQRILNAENIDVSFETFPYYISDTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPSVLSKRSGQTSILHHKKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKAAALKKGDRVKFVGNFPPAVSSLQNFSSRGPSYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFETLPQNIVVIGSNTQLDSRKEKVLAFGRCDLMIIRKIVFLYLITVFLCFKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLSRLFPNKVTIQLPQEEALLSDWKKLLDHDIETMKAQSNVVMLRSVLKRIGWDCTDLETICIKDQTLTTENVEKIIGWAITYHFMHSFEASTKDLKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 1 72 - -
Tpr1g1287 1274 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1274 - -
Tpr1g1287 1274 SUPERFAMILY SMAD/FHA domain 140 259 IPR008984 GO:0005515
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 1 106 - -
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 527 561 - -
Tpr1g1287 1274 ProSitePatterns AAA-protein family signature. 1113 1132 IPR003960 GO:0005524|GO:0016887
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 298 359 - -
Tpr1g1287 1274 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1274 - -
Tpr1g1287 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 969 1246 IPR027417 -
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 332 359 - -
Tpr1g1287 1274 Gene3D - 1142 1236 - -
Tpr1g1287 1274 Pfam ATPase family associated with various cellular activities (AAA) 1010 1139 IPR003959 GO:0005524|GO:0016887
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 544 560 - -
Tpr1g1287 1274 CDD AAA 1008 1141 - -
Tpr1g1287 1274 Pfam AAA+ lid domain 1163 1199 IPR041569 -
Tpr1g1287 1274 Gene3D - 968 1248 IPR027417 -
Tpr1g1287 1274 SMART AAA_5 1006 1143 IPR003593 -
Tpr1g1287 1274 MobiDBLite consensus disorder prediction 302 317 - -
Tpr1g1287 1274 Gene3D - 132 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1287 Tpr-Chr1 11563875 11574243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1287 969 1215 Calmodulin-binding Proteins AT3G56690 40.476 1.09e-41 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1287 - - gmx:100801477 1867.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1287 1 11563875 11574243 Tpr1g1287 1 11563875 11574243 ECH