Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1284 ATGGAATCTACTAACCTTAATCTGCCGCACAAAGTTTTATGCATTGTTATTGGTGTTCAGTTAAAGGCACATGTTAACACAGATGAGGTTTTCGCTCTAGTTACATTAATCCCATTGAAGCAACAAGAGTTTATGGTAGAGGACAATCATCCATTTGATGATAGTCCTAGTGAAGTCTACTCTTTTAAGAAGATGCTGACTTCAATTGAAGATGCTGCTGGACTTTATATTCCAAAGGAACATGCAGAGAGATGCTTCCCTTCATTGGATATGACTGTTCAACAACCAATGCAAGATCTTGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACATATTTACTGTGATCATAAAAAAGAACACATGCTCACATGTGGCTGGAGCACGTTCGTTAATTCGAAAAAACTTGTTCCCGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCATCGAGCAATGAAACAACATAGTGATATATGGAAAACATCGTCTCCACTTGGACTAATGTGCGCTGCTTCCCATGCTGTTTCGACAGGAACTATGTTCCATGTCCAGTACTACCCTTGGATTACTCCCTTTGAGTTTATGATCCCTCTAAAAACTTATGTTGAGTCCATTGAAAGAGACTATTCCATTGGAACAAGGGTACGCAGGTTGTTGTCTGAAGTTGAAGGATCTCCAAGAAGATATGGTACAATTGTTGGCAATGAAGATATTGATCCCATTAGGTGGCCTGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCACACCAAATTCTTTTACACAACTTGAAAGCGTATGTCCTTGGTGGATTGAGCCTTTGGGATCTCCCAAGATTAAGAGCTTTCCTATTCCCCCTTTATCAAATGAGGTTATTGGGAGTTCATCCACACCTGAATATCACACTGTGGACGTGGACATGGACATGCAAGGTCGACAACATTACAATACTAGAAATGATGAAAATTCAATTTTCTTCATTTTTGCTTTCTCTATAATACTTTGCTTTTTTACATTTGTGATTTTTGTCTTTCGTCCTCTTTTGTAA 1083 0.3915 MESTNLNLPHKVLCIVIGVQLKAHVNTDEVFALVTLIPLKQQEFMVEDNHPFDDSPSEVYSFKKMLTSIEDAAGLYIPKEHAERCFPSLDMTVQQPMQDLVVKDLHGIEWNFRHIYCDHKKEHMLTCGWSTFVNSKKLVPGDSCIFVRGENGEIGIGIHRAMKQHSDIWKTSSPLGLMCAASHAVSTGTMFHVQYYPWITPFEFMIPLKTYVESIERDYSIGTRVRRLLSEVEGSPRRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSTPNSFTQLESVCPWWIEPLGSPKIKSFPIPPLSNEVIGSSSTPEYHTVDVDMDMQGRQHYNTRNDENSIFFIFAFSIILCFFTFVIFVFRPLL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1284 360 PANTHER AUXIN RESPONSE FACTOR 6 330 - -
Tpr1g1284 360 Pfam Auxin response factor 181 262 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr1g1284 360 Gene3D - 59 162 IPR015300 -
Tpr1g1284 360 SUPERFAMILY DNA-binding pseudobarrel domain 59 161 IPR015300 -
Tpr1g1284 360 Pfam B3 DNA binding domain 63 160 IPR003340 GO:0003677
Tpr1g1284 360 ProSiteProfiles B3 DNA-binding domain profile. 60 162 IPR003340 GO:0003677
Tpr1g1284 360 SMART B3_2 62 162 IPR003340 GO:0003677
Tpr1g1284 360 CDD B3_DNA 62 160 IPR003340 GO:0003677
Tpr1g1284 360 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 330 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr1g1284 360 Gene3D - 218 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1284 Tpr-Chr1 11527604 11530911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1284 7 301 B3 DNA Binding Superfamily AT5G62000 45.161 3.47e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr1g1284 B3 2.6e-18 CL0405