Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1278 ATGGGTGATAACAACAACAAAGGAAAAGTCATAGAAGAAGCCTTTAACTACAAAAACAACAACAATTTCACATCTCCTCAAGATCACGAAGTAATCAAAGAACAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGAATCATGAAACAAATCTTGCCACCAAATGCAAAAATCTCTAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTTTCTGAGTTTGTTAGCTTTGTAACTGGCGAAGCATCTGACAAGTGTCACAAGGAGAAGAGAAAGACAGTTAATGGTGATGATGTTTGTTGGGCCATGACAAATCTAGGGTTTGATGATTACTCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGAGAATTCGATGTGGAAAGAGGAAATCAAAGTAAGGGTAACAATATTAACAATAGTGATGAAATTGAAACATATAATTATGATGATGATAAGTCACAAACTCAAGGAACTAGTAATAGGAACCTTGGACCTAAGTCTAGGGGATTTTGA 513 0.3528 MGDNNNKGKVIEEAFNYKNNNNFTSPQDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKRYLYKYREFDVERGNQSKGNNINNSDEIETYNYDDDKSQTQGTSNRNLGPKSRGF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1278 170 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Tpr1g1278 170 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Tpr1g1278 170 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Tpr1g1278 170 MobiDBLite consensus disorder prediction 147 170 - -
Tpr1g1278 170 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 16 159 - -
Tpr1g1278 170 Gene3D Histone, subunit A 27 163 IPR009072 GO:0046982
Tpr1g1278 170 MobiDBLite consensus disorder prediction 150 170 - -
Tpr1g1278 170 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tpr1g1278 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Tpr1g1278 170 SUPERFAMILY Histone-fold 35 149 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1278 Tpr-Chr1 11494373 11495400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1278 31 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.208 3.41e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tpr1g1278 CBFD_NFYB_HMF 5.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1278 K08065 - gmx:100817274 218.779