Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1268 ATGATTCCTGTCTTTTGGTCCATACGCCGCCTTGTCTTGTTTCTTGTCTTTACTTCAAATTTCCTAAACAAATCAGCCTCTGCCTTAGGAAATGAGACTGACCATTCTGCATTACTCGAATTCAAAAAATCAGTAACGAGTGACCCTTTTGGAGTATTAAACTCTTGGAATAGTTCTAGCCACTTTTGCAAGTGGCATGGAGTAACTTGCGGTCAAAGCCATCAAAGAGTCACAGAGATAGAGTTGGAAGGATACCAACTACAAGGTTCTATATCACCTCACGTTGGTAATCTTTCCTTTTTGAGAATCCTCTACCTTGATGATAATCGCTTCCATGCCAATATCCCACGAGAATTAGGCCGTTTATTTCGACTGCAGAACATCTCTTTGGAAAATAACACTTTACAAGGTCAATTTCCAATCAGTCTGACAAATTGCTCTCAACTGAGGAAGCTCAGATTATACGGGAATCATTTTATTGGCCAAATACCAATGGAGATTCACTCCCTTGCCAAACTTGAATATTTGAATGTTGGAGAAAACAATCTAACTGGAAGAATTCCACCTTCTATGTGGAATCTTTCTTCCATCACTGTTCTCTCTTTTGCTTTTAACTACTTGGAGGGAAACATACCAGAAGAAATAGGCCTTTTAAAACACTTGACAAGGATGTCAGTGACACAAACCGGATTGTCTGGTACGCTTCCCTTATCACTTTACAATTTGTCATCTCTAACTCACCTCTACACAGCAGTCAATCAATTCAACGGTTCTCTTCCAACCAACATATTCACAACCCTCCCAAATCTTAGGAAATTTCTGTTTGGCTCTAATCACTTAACAGGTAAAATCCCAGCATCCCTCAGTAATGCATCTCGGATGCAATTGTTTGATATTGGTCTAAACAATTTTGTTGGACAAATTCCAAATCTTGGAAAACTACAAGATCTTTCCATTTTTGCCGTAGATGCAAATCATCTTGGCAGCAATTCATCATCCGGTGGTGATGACTGGGAGTTTATAAAATCTTTGGTAAACTGTAGTAAACTTGATATAGTATTTGTTCAGCATAATAACTTTGGAGGTCCGTTGCCCAAATTTATTGGAAATTTGTCCACCCATCTCTCACAACTTGGTATGGCTAGTAATCTGATATCTGGAAAAATCCCAACAGAACTGGGAAATCTTGTAAACTTGATTTACTTGTCCATACAGGACAACCTCTTAACTGATGTTATTCCAGAGAGTTTTTCTAAGTTTCAAAAAATGCAAGAATTGTATTTAAAAATAAACAAACTTTCAGGTGAAATTCCGGCAGCTATTTTAGGAAATCTCAGTCAATTGTCTCTGTTGGATTTATCAGACAATTTGTTGGTTGGAAAGATTCCTTCAACTATTGGAAATTGCAAAATGTTGCAAGGAGTAGACTTCTCAATGAACAACCTTAGTGGAGCTATACCAACAGAACTTCTTGGCCTTTCCTCATTATCAATACTACTCAACCTATCACACAACTCATTAAGTGGTAATTTGCCTCCTGAGGTGGGCTTGCTTCGAAACATTGGAATGCTTGATATCTCAGAAAATCATCTCTCTGGTGGCATTCCTGCAATAATTGGAGATTGCTTAAGCTTGGAATACCTTTTTTTAGAGGCTAATTCTTTAGATGGAAACATACCATCTTCTTTATCTTCACTAAAAGGTCTTCTACAACTTGACCTATCGAGGAACAACTTGTCTGGTTCAATTCCACAAGAATTACAAAATATTTCTGCATTAGAATGGTTCAATGCTTCTTTTAACAAGTTGGAGGGTGAGGTTCCCTTGCATGGCATTTTCCAGAATGCTAGTAGAGTTTCACTGACCGGAAATGACAGGCTTTGTGGCGGAGTAGCAAAACTGAATCTGCGACTTTGCCCGCCAAAAGATGTGAAAAAGAGAAAACACCATACCCACCGCAAGTTGATCATAATCATCTTCTCAATTGCATTTCTTCTTCTACTGTCATTTGTCCTTACTTTCATCATCTATAAGCTAATGAGGAAAAGGCAGAGAAAAGCATCCACTGATTCAACAATTGAGCAACTTCCAAAGGTATCATACCAAGAACTACACCATGCCACTGATGGATTCTCGGTTCAGAACTTGATAGGAACCGGAGGTGTAGGTTTTGTGTACAAAGGAAGACTTAATTCAGAAGAAAGAATTGTTGCAATAAAGGTTCTAAACCTTCAGAAGAAAGGAGCTCATAAAAGTTTCATTGCCGAATGTAATGCTTTTAGAAATATCAGGCATAGAAATCTAGTCAAGATTATCACATGTTGCTCGAGTGTGGATCACAAAGGTAATGACTTTAAAGCAATAGTTTATGAATTCATGACAAATGGAAGCTTAGAGGAATGGTTGCATCAAAATGCAGAACTACAAAGAACACTGCCATTGGAAGAAAGATTAGAAATTGTTTTTGGAATTGCTTCTGCATTACACTATCTTCACCATGACTGTGAGAAGCCTATTGTTCATTGTGATTTAAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCTAGACTTGTTTCAACAATTGATGGTAACTCCAATAACCAAACCAGCTCGATGGGGATAAAAGGGACTATAGGTTATACTCCTCCAGAGTATGGAATGGATTCTCAACTTTCAACAGAAGGCGACATGTATAGCTTTGGGATTCTTCTTTTGGAGATGTTAACCGGGAGAAGACCAATTGATGAAATGTTTAAAGATGGGTACAACCTCCATAACTATGTAAAAATTGCATTTCCAAATAACATTTTGGAGATTGTCGATGCCACTCTACTCTCAATGGAAAATGACCATGTTGCAGTAACAACCGAGGTTGCAATTCATTTGCATCCTAATGTTGAAAGGTGTTTATCTTCTTTATTTAAGATTGGATTATCTTGTTCAGTGGAGTCTCCAAGAGAACGAATCAATATCAAGGAAGTCATCACAGAACTCAATATAATTTTGAAAGCTTTGGCTGATCCAAGGGGTTAA 3063 0.379 MIPVFWSIRRLVLFLVFTSNFLNKSASALGNETDHSALLEFKKSVTSDPFGVLNSWNSSSHFCKWHGVTCGQSHQRVTEIELEGYQLQGSISPHVGNLSFLRILYLDDNRFHANIPRELGRLFRLQNISLENNTLQGQFPISLTNCSQLRKLRLYGNHFIGQIPMEIHSLAKLEYLNVGENNLTGRIPPSMWNLSSITVLSFAFNYLEGNIPEEIGLLKHLTRMSVTQTGLSGTLPLSLYNLSSLTHLYTAVNQFNGSLPTNIFTTLPNLRKFLFGSNHLTGKIPASLSNASRMQLFDIGLNNFVGQIPNLGKLQDLSIFAVDANHLGSNSSSGGDDWEFIKSLVNCSKLDIVFVQHNNFGGPLPKFIGNLSTHLSQLGMASNLISGKIPTELGNLVNLIYLSIQDNLLTDVIPESFSKFQKMQELYLKINKLSGEIPAAILGNLSQLSLLDLSDNLLVGKIPSTIGNCKMLQGVDFSMNNLSGAIPTELLGLSSLSILLNLSHNSLSGNLPPEVGLLRNIGMLDISENHLSGGIPAIIGDCLSLEYLFLEANSLDGNIPSSLSSLKGLLQLDLSRNNLSGSIPQELQNISALEWFNASFNKLEGEVPLHGIFQNASRVSLTGNDRLCGGVAKLNLRLCPPKDVKKRKHHTHRKLIIIIFSIAFLLLLSFVLTFIIYKLMRKRQRKASTDSTIEQLPKVSYQELHHATDGFSVQNLIGTGGVGFVYKGRLNSEERIVAIKVLNLQKKGAHKSFIAECNAFRNIRHRNLVKIITCCSSVDHKGNDFKAIVYEFMTNGSLEEWLHQNAELQRTLPLEERLEIVFGIASALHYLHHDCEKPIVHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIDGNSNNQTSSMGIKGTIGYTPPEYGMDSQLSTEGDMYSFGILLLEMLTGRRPIDEMFKDGYNLHNYVKIAFPNNILEIVDATLLSMENDHVAVTTEVAIHLHPNVERCLSSLFKIGLSCSVESPRERINIKEVITELNIILKALADPRG* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1268 1020 Gene3D Ribonuclease Inhibitor 191 330 IPR032675 -
Tpr1g1268 1020 SMART serkin_6 711 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1268 1020 Gene3D Ribonuclease Inhibitor 331 637 IPR032675 -
Tpr1g1268 1020 Pfam Protein kinase domain 712 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1268 1020 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Tpr1g1268 1020 Pfam Leucine rich repeat 398 458 IPR001611 GO:0005515
Tpr1g1268 1020 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Tpr1g1268 1020 PANTHER OS04G0122200 PROTEIN 20 1012 - -
Tpr1g1268 1020 SUPERFAMILY Protein kinase-like (PK-like) 689 1008 IPR011009 -
Tpr1g1268 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Tpr1g1268 1020 ProSiteProfiles Protein kinase domain profile. 711 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1268 1020 Gene3D Transferase(Phosphotransferase) domain 1 793 1017 - -
Tpr1g1268 1020 SUPERFAMILY L domain-like 31 327 - -
Tpr1g1268 1020 Gene3D Ribonuclease Inhibitor 31 190 IPR032675 -
Tpr1g1268 1020 PANTHER LRR RECEPTOR-LIKE KINASE 20 1012 - -
Tpr1g1268 1020 SMART LRR_typ_2 396 419 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 170 194 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 242 266 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 566 589 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 445 469 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 267 291 IPR003591 -
Tpr1g1268 1020 SMART LRR_typ_2 98 122 IPR003591 -
Tpr1g1268 1020 Gene3D Phosphorylase Kinase; domain 1 691 792 - -
Tpr1g1268 1020 SUPERFAMILY L domain-like 346 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1268 Tpr-Chr1 11393426 11398451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1268 31 1008 Receptor kinase-like Gene Family AT3G47570 45.565 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr1g1268 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1268 - - mtr:MTR_1g088940 1629.77