Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g1266 | ATGTGTTTTTGTTCCAATTTCTTGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATTAAACGAAATCGCAGTAACCAAACATATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGACGTGCAACCCACACTGACTACATCATTTCTCTAAACTGCGATGATGTATCAAGAGGGAGTAGCACTTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACCGTGTATGATGCACACCCTCCAATCTATGGAGCCAACGTTGCGAAGTCTCGTTCCACCAGGATGGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATTGTGCACGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCGATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCAACCCGCACAGAGAATCTCCAATCGTTAGTACCTTTGACTGGGCAAAACGATGGAATGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCACGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCCGTTAAGAATTTTCAGCTGGTTGCATCTCCCAAAAATGGTGTTTCTGAACAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACTATGGATTACCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGTTTTGACACCAAGATTGCTTGTGAATGA | 897 | 0.4404 | MCFCSNFLPGPRDSLIQCYIKRNRSNQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGANVAKSRSTRMVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTRFLHSRIDTSPSIPFFRSKSTRTENLQSLVPLTGQNDGMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* | 299 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g1266 | 298 | PANTHER | TUBBY-RELATED | 9 | 297 | - | - | |
Tpr1g1266 | 298 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 3-RELATED | 9 | 297 | - | - | |
Tpr1g1266 | 298 | ProSitePatterns | Tub family signature 2. | 283 | 298 | IPR018066 | - | |
Tpr1g1266 | 298 | SUPERFAMILY | Tubby C-terminal domain-like | 7 | 298 | IPR025659 | - | |
Tpr1g1266 | 298 | Gene3D | Tubby Protein; Chain A | 4 | 298 | IPR025659 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 60 | 76 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 76 | 100 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 125 | 152 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 210 | 227 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 228 | 244 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 255 | 274 | IPR000007 | - | |
Tpr1g1266 | 298 | PRINTS | Tubby superfamily signature | 276 | 298 | IPR000007 | - | |
Tpr1g1266 | 298 | Pfam | Tub family | 9 | 293 | IPR000007 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g1266 | Tpr-Chr1 | 11347509 | 11350911 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g1266 | 9 | 298 | TUB Transcription Factor Family | AT2G47900 | 77.397 | 1.17e-161 | 454 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Tpr1g1266 | Tub | 3e-109 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g1266 | K19600 | - | gmx:100809257 | 550.436 |