Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1266 ATGTGTTTTTGTTCCAATTTCTTGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATTAAACGAAATCGCAGTAACCAAACATATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGACGTGCAACCCACACTGACTACATCATTTCTCTAAACTGCGATGATGTATCAAGAGGGAGTAGCACTTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACCGTGTATGATGCACACCCTCCAATCTATGGAGCCAACGTTGCGAAGTCTCGTTCCACCAGGATGGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATTGTGCACGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCGATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCAACCCGCACAGAGAATCTCCAATCGTTAGTACCTTTGACTGGGCAAAACGATGGAATGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCACGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCCGTTAAGAATTTTCAGCTGGTTGCATCTCCCAAAAATGGTGTTTCTGAACAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACTATGGATTACCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGTTTTGACACCAAGATTGCTTGTGAATGA 897 0.4404 MCFCSNFLPGPRDSLIQCYIKRNRSNQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGANVAKSRSTRMVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTRFLHSRIDTSPSIPFFRSKSTRTENLQSLVPLTGQNDGMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1266 298 PANTHER TUBBY-RELATED 9 297 - -
Tpr1g1266 298 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 9 297 - -
Tpr1g1266 298 ProSitePatterns Tub family signature 2. 283 298 IPR018066 -
Tpr1g1266 298 SUPERFAMILY Tubby C-terminal domain-like 7 298 IPR025659 -
Tpr1g1266 298 Gene3D Tubby Protein; Chain A 4 298 IPR025659 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 60 76 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 76 100 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 125 152 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 210 227 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 228 244 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 255 274 IPR000007 -
Tpr1g1266 298 PRINTS Tubby superfamily signature 276 298 IPR000007 -
Tpr1g1266 298 Pfam Tub family 9 293 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1266 Tpr-Chr1 11347509 11350911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1266 9 298 TUB Transcription Factor Family AT2G47900 77.397 1.17e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr1g1266 Tub 3e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1266 K19600 - gmx:100809257 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1266 1 11347509 11350911 Tpr1g1266 1 11347509 11350911 ECH