Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1248 ATGATTATCAAAACCTTCATCTTCATCCTCTTCTTAACAACTTTCCCTCTCTTTTCCATCTCCGCCACATGTCCTCTCAACTTCACCATCCTAACCACCCTCAACACCGCCGCCGCCACAACACCACCATCTTCCTTCACTTCAACACCATGTCAGTTCGTCCACCAAGCTCTCCGCCTTGTTCAATCCGACTACCTCATCCGTACCGACTCTTTCCTCCCTCCCTTAAACTCCTCCATCCCATGCTGGAACTCTTTTCAATCTTACATAAACCAATTTGCTCCAAATTTCAACATTCGTTCTTCTTGTGGCTTTCAAACAAATTGGATCTCACAAGGTTGTGTCAACGTTACAACAAGACAACAATTTGAATCAATAGTTCCAAAATCAGCAATTCTAAATATGCAATTAAATTGTAATCAATCTATTCAAGATAATTCTCCTTGTGCTCTTTGTACTACTAGTTTATCTGGTTTACCTTCTCTTGGTCAATCTATTGGTAATCTTTCTGAGTGTACTGGTTATCCTTCAATCTATGCTGCTGCTTTTGCTAATCAATTTGGACCTTCTGATCCTGGTACTGCTAAGTGTTTATTTGCACTTGATTTTACTTCTGGTGCTTCTTCTGGTAATAAGAAAAAAGTTGTTATTATTGTTGTTGTTTGTGTTGTTTCTGTTTTGGTTTTGTTGTTGGTAGTTATTGGTTTTTGGGTTTATTGGAAATTTAATGATAAGGCAATTGGGGATGGTAAGGATTATGGTGCTAATATCGGTGAGGCGGGTTCGGTTTCTGGGTTGGATTCAATGCAGCAAAGTACTACTTTGATTAGGTTTAGTATTGATGATATTAAGAAGGCGACCAAGAATTTTCATAGAGATAATATAATTGGGAAAGGGGGTTATGGAAATGTGTATAAAGGTTTGTTGAATGATGGAAGTGAAGTTGCTTTTAAGAGGTTTAAGAATTGTTCTGCTGCTGGTGATACTAGTTTTACTCATGAGGTTGAAGTTATTGCTAGTGTTAGGCATGTGAATCTTGTTGCTTTGAGAGGCTATTGTAGTGCGACGACTCGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGGAGGAACGAAACTTAGTTGGCCGGATCGTCAGAAGATTGCTCTTGGAACTGCTAGGGGATTGGCTTATTTGCATTATGGAGCTCAACCTGCTATTATTCATAGGGATATTAAAGCAAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTTGCTGATTTTGGACTTGCAAAGTTTAATCCTGAGGGAATGACTCATATGAGTACAAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGAAGAAAAGCTCTTGAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGAAATGCGTTGGATGTTATTGAAGATGGGATGCCGGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTTCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGAGGATGAAGTGCCTACGATACCTGGACGGCCGATTCCTCTTGTCGCTGGGAGGCTTGATATTGAGAGATCTGCTAGCAGTTTTGGTGGCTCCGGTCAGCTCTCTAGTCCAACAGGTTATCAATCGTTCACGTTAGAAATGGGAAGCGAACACCATTCTTCTAATCTTTCTAGGGATGAAAAAAGCTCCACCTCTAGGATGTTGAGTTTAGACTCGGATCAATGA 1923 0.3999 MIIKTFIFILFLTTFPLFSISATCPLNFTILTTLNTAAATTPPSSFTSTPCQFVHQALRLVQSDYLIRTDSFLPPLNSSIPCWNSFQSYINQFAPNFNIRSSCGFQTNWISQGCVNVTTRQQFESIVPKSAILNMQLNCNQSIQDNSPCALCTTSLSGLPSLGQSIGNLSECTGYPSIYAAAFANQFGPSDPGTAKCLFALDFTSGASSGNKKKVVIIVVVCVVSVLVLLLVVIGFWVYWKFNDKAIGDGKDYGANIGEAGSVSGLDSMQQSTTLIRFSIDDIKKATKNFHRDNIIGKGGYGNVYKGLLNDGSEVAFKRFKNCSAAGDTSFTHEVEVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSGGTKLSWPDRQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALETNDDGQPSALTDWAWSLVRTGNALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDEVPTIPGRPIPLVAGRLDIERSASSFGGSGQLSSPTGYQSFTLEMGSEHHSSNLSRDEKSSTSRMLSLDSDQ* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1248 640 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1248 640 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 15 620 - -
Tpr1g1248 640 ProSiteProfiles Protein kinase domain profile. 290 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1248 640 MobiDBLite consensus disorder prediction 592 617 - -
Tpr1g1248 640 PANTHER OS01G0253100 PROTEIN 15 620 IPR045271 GO:0004714|GO:0006468
Tpr1g1248 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Tpr1g1248 640 Gene3D Phosphorylase Kinase; domain 1 259 369 - -
Tpr1g1248 640 Gene3D Transferase(Phosphotransferase) domain 1 371 572 - -
Tpr1g1248 640 Pfam SPARK 21 161 IPR043891 -
Tpr1g1248 640 Pfam Protein kinase domain 290 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1248 640 MobiDBLite consensus disorder prediction 592 640 - -
Tpr1g1248 640 SUPERFAMILY Protein kinase-like (PK-like) 266 565 IPR011009 -
Tpr1g1248 640 CDD STKc_IRAK 296 565 - -
Tpr1g1248 640 MobiDBLite consensus disorder prediction 626 640 - -
Tpr1g1248 640 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1248 Tpr-Chr1 11154982 11157572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1248 1 611 Receptor kinase-like Gene Family AT2G48010 61.726 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Tpr1g1248 Pkinase 3.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1248 - - gmx:100800760 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1248 1 11154982 11157572 Tpr1g1248 1 11154982 11157572 ECH
Tpr6g3608 6 39142371 39145069 Tpr1g1248 1 11154982 11157572 ECH