Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1237 ATGCTTCATTACAATACAACAACACATGTAGCAGCAATACTTATGATATCTGATATTTCAAATTCAGTTGCAAATCAATCGTTGGCGAATGCTCCTACATGGTCAATACAGACTCATCCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGCGCCGCCTGCTCATAACTCTGTCAAGGTTGAAGGAACTGCTGGTGCAACTACTATATCAAGGGCAAGTCCACAAGTAACAACAACTCAGAGCATTAGACCATTTATTACTCAAATGGGACCTGGAAATATGTCTAGCATGCACCAGCCATTGCAGGGTGGAAACATGGTTCAACCTCCTATGATTCCTAGTCACTCTGATATTGCAAAGGTTGTTCAGAAATTGTTACTACCGAAGGTTCCTGACCATCCTACATGGACTCCTCCGTCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACTTGTGAGCTCCCTGTCAATGAGGTTGATTCTGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCAGCGGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTAATACAGCTGGTATTCAATCATCTTCAGAGAAGAAAGCAGAGAGCTTAGATTCAAAGGGCAGCCCACAGATGTTTACATCAAGTGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATCACAATACTGAGCCGTCATTTGACTCAAATACCCCTGATATGAGAGATATACAAGGTTCCAACTTTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCAAGCATATGTATGAAATCTGCTGTTTGTAGTGCTAACACTGGCTTGCAGGGTGAAAGTTATGCTGAACAAATAGATTCAAAGGCTTTGACTTCACAAGATTCTCAAGCTGGGATAACAGTGTCACACGACAATGCTGAAATATCATCAGATAGACATGTTAGCAGTAGTTTGACAATTAGTAATCAAAAGGAATCTCATGGAGGAGAAAATATAACTACTGATATCAACCACAATGACCTAGATGTTCCACAGCCAAATTCTGTCGGAGTTTCTGGAACTAATACTGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAAAATGGATTGGTGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAAAAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCCACCATGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAGGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCAACCAAGTGCTACCTCCCTTATGATTTGCCGGGGAATATCGGTCATCCTTGTATATCTGAAGTCAATGAGTTTTGTGGTGAATATTTGACCCCTAGCATCTATTACTCTTTAACTGAAAATTCTTTAGTCTACTGGATTGATGAATCTAACGCAGTAAATCATTTGTGTGCCGCACTAAAAATTTGGGAACATTGGGCGCTAGAGCCTCTGTAA 1611 0.4084 MLHYNTTTHVAAILMISDISNSVANQSLANAPTWSIQTHPVSLARNVSENKAPPAHNSVKVEGTAGATTISRASPQVTTTQSIRPFITQMGPGNMSSMHQPLQGGNMVQPPMIPSHSDIAKVVQKLLLPKVPDHPTWTPPSRDYMSKTFTCQTCELPVNEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSNTAGIQSSSEKKAESLDSKGSPQMFTSSGNSVPTVSSANHNTEPSFDSNTPDMRDIQGSNFSSSIETIDEKPDPSICMKSAVCSANTGLQGESYAEQIDSKALTSQDSQAGITVSHDNAEISSDRHVSSSLTISNQKESHGGENITTDINHNDLDVPQPNSVGVSGTNTEGIQHSALSSDSSHAVKWIGEKKYYQSCCIDGKTYRLQGHAFFTSHHGKLTPSKLQSMWEDSKTGVKWVKATKCYLPYDLPGNIGHPCISEVNEFCGEYLTPSIYYSLTENSLVYWIDESNAVNHLCAALKIWEHWALEPL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1237 536 CDD PHD_SF 150 198 - -
Tpr1g1237 536 MobiDBLite consensus disorder prediction 218 279 - -
Tpr1g1237 536 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 489 - -
Tpr1g1237 536 MobiDBLite consensus disorder prediction 218 237 - -
Tpr1g1237 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 199 IPR013083 -
Tpr1g1237 536 ProSiteProfiles Zinc finger PHD-type profile. 148 201 IPR019787 -
Tpr1g1237 536 SMART PHD_3 150 199 IPR001965 -
Tpr1g1237 536 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 489 - -
Tpr1g1237 536 ProSitePatterns Zinc finger PHD-type signature. 151 198 IPR019786 -
Tpr1g1237 536 Gene3D - 404 522 IPR043151 -
Tpr1g1237 536 Pfam PHD-finger 151 199 IPR019787 -
Tpr1g1237 536 SUPERFAMILY FYVE/PHD zinc finger 142 206 IPR011011 -
Tpr1g1237 536 MobiDBLite consensus disorder prediction 245 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1237 Tpr-Chr1 11053583 11057643 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g1237 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1237 - - gmx:100807139 652.129